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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAAACTTTGATATAGTTGTTACCCTCAGAAAGAAAGATCCAACTTTGCCTTCTTTTGAGTCCCGAGATTCCGCAGGAGCCGAGGTCACCAAACATAAGgtgatgtcaagacttttctgttatacattcgaaaaacaggtcttattggatttttactggtttcttaacaattttttttatggaatttgttttatcag

Basic information

species Arabidopsis thaliana
transcript AT1G19715.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124830003|gb|EH914564.1|EH914564
EST:     CTTCTTTTGAGTCCCGAGATTCCGCAGGAGCCGAGGTCACCAAACATAAG                         TTGGTGACAGATACTG
genomic: CTTCTTTTGAGTCCCGAGATTCCGCAGGAGCCGAGGTCACCAAACATAAGgtgatgtcaa ... gttttatcagTTGGTGACAGATACTG
EST: gi|125093468|gb|EL151037.1|EL151037
EST:     CTTCTTTTGAGTCCCGAGATTCCGCAGGAGCCGAGGTCACCAAACATAAG                         TTGGTGACAGATACTGAGAAGTCACAGTCAAAAATTGAAGGTGG
genomic: CTTCTTTTGAGTCCCGAGATTCCGCAGGAGCCGAGGTCACCAAACATAAGgtgatgtcaa ... gttttatcagTTGGTGACAGATACTGAGAAGTCACAGTCAAAAATTGAAGGTGG