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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatcgagactctttatcctataaatattgtgttggtggttctcagaaattaatcactgttctcttcttgctgtttagGTCAAATTTGATTACCCACATGAGTATCTGATTTCAGTAAATGGAACCTACGGTAGCTTTGACGTCTGGGGAACTATATGTGTCCGATCACTTACTTTCG

Basic information

species Arabidopsis thaliana
transcript AT1G19715.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125165142|gb|EL191558.1|EL191558
EST:     CGGTTTGGTCTGAAAAACGTGGAGGAAAGGGAGGCAAGAAGTTTGATAAG                         GTCAAATTTGATTACCCACATGAGTATCTGATTTCAGTAAA
genomic: CGGTTTGGTCTGAAAAACGTGGAGGAAAGGGAGGCAAGAAGTTTGATAAGgtatgatcga ... tgctgtttagGTCAAATTTGATTACCCACATGAGTATCTGATTTCAGTAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattgtgttggtggttctcagaaattaatcactgttctcttcttgctgtttagGTCAAATTTGATTACCCACATGAGTATCTGATTTCAGTAAATGGAACCTACGGTAGCTTTGACGTCTGGGGAACTATATGTGTCCGATCACTTACTTTCG
                        aattaat  putative branch site (score: 3)
                                    ttctcttcttgctgtt  putative PPT
                     agaaattaat  TA-rich tract