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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACACTACTTGTCCTTTCCCTGCAAGTGCCAGgtacacacccttctttctttcttcacttcttatttgttgttttgcaaacaagaattggctttggtcttgaggatctttgcactctagatctttgtttaagctgattgatacaatctgagagatgtgtttgtatgtttgttgttatttaccatttaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G18650.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079148|gb|DR374905.1|DR374905
EST:     GCTACACTACTTGTCCTTTCCCTGCAAGTGCCAG                         TGGAAGTGGGACAACGACTCCAGTGACGACAACACCTTCGACAAGAGTCCC
genomic: GCTACACTACTTGTCCTTTCCCTGCAAGTGCCAGgtacacaccc ... tttaatgcagTGGAAGTGGGACAACGACTCCAGTGACGACAACACCTTCGACAAGAGTCCC
EST: gi|164023382|gb|ES080260.1|ES080260
EST:     CTACTTGTCCTTTCCCTGCAAGTGCCAG                         TGGAAGTGGGACAACGACTCCAGTGACGACAACACCTTCGACAAGAGTCCC
genomic: CTACTTGTCCTTTCCCTGCAAGTGCCAGgtacacaccc ... tttaatgcagTGGAAGTGGGACAACGACTCCAGTGACGACAACACCTTCGACAAGAGTCCC
EST: gi|19875296|gb|AU236127.1|AU236127
EST:     GCTACACTACTTGTCCTTTCCCTGCAAGTGCCAG                         TGGAAGTGGGACAACGACTCCAGTGACGACAACACCTTCGACAAGAGTCCC
genomic: GCTACACTACTTGTCCTTTCCCTGCAAGTGCCAGgtacacaccc ... tttaatgcagTGGAAGTGGGACAACGACTCCAGTGACGACAACACCTTCGACAAGAGTCCC