1 5' 3' | 2 5' 3' | 3 5' 3' |
CCCTGCAACTGGCTCCATCCCAAAGTGCTTCGTTCTGGTACAGCGACCATGGCAGTTTTTGTTCTTGTGATGATTTTGTTGGCCATGGCTGGTCACTCAAgtaagtatatcttcgtctcttttcaaatccttctctgtctcatatagatcctcttcttttcttctatggcaaaacgattcttcttttctttgttcaccca...
species | Arabidopsis thaliana |
transcript | AT1G18650.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAGCTTTTTGTTCTTGTGATGATTTTGTTGGCCATGGCTGGTCACTCAA GTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAGAEST: gi|19875296|gb|AU236127.1|AU236127
genomic: GCAG-TTTTTGTTCTTGTGATGATTTTGTTGGCCATGGCTGGTCACTCAAgtaagtatat ... gtgtctttagGTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAGA
EST: GGCAGTTTTTGTTCTTGTGATGATTTTGTTGGCCATGGCTGGTCACTCAA GTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAGA
genomic: GGCAGTTTTTGTTCTTGTGATGATTTTGTTGGCCATGGCTGGTCACTCAAgtaagtatat ... gtgtctttagGTGGGACATGGTGTGTATGCAAAGAAGGGTTAAGCGAGGCAATGCTGCAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGCAACTGGCTCCATCCCAAAGTGCTTCGTTCTGGTACAGCGACCATGGCAGTTTTTGTTCTTGTGATGATTTTGTTGGCCATGGCTGGTCACTCAAgtaagtatatcttcgtctcttttcaaatccttctctgtctcatatagatcctcttcttttcttctatggcaaaacgattcttcttttctttgttcaccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcctcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaacga