1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGgtgaaaatcttcttttgaaagtttcttgttagtgttgtcttacgcagtatcttatttttgatactaaaattctctttaccag
species | Arabidopsis thaliana |
transcript | AT1G17280.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG GTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCEST: gi|116477746|gb|EG520338.1|EG520338
genomic: ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGgtgaaaatct ... tctttaccagGTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGC
EST: ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG GTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCEST: gi|125104245|gb|EL158381.1|EL158381
genomic: ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGgtgaaaatct ... tctttaccagGTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGC
EST: GAGGGAACACCTTTTGCAG GTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCEST: gi|86056972|gb|DR352729.1|DR352729
genomic: GAGGGAACACCTTTTGCAGgtgaaaatct ... tctttaccagGTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGC
EST: ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG GTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCEST: gi|125117165|gb|EL166417.1|EL166417
genomic: ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGgtgaaaatct ... tctttaccagGTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGC
EST: ATCATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAG GTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAG
genomic: ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGgtgaaaatct ... tctttaccagGTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGgtgaaaatcttcttttgaaagtttcttgttagtgttgtcttacgcagtatcttatttttgatactaaaattctctttaccag
- - - GCTGGA
- - - - TGGAAG