1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGAAAGTGAGATTAACGAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCGATTCAGgtgatcaatttctttcatattttcgcaattatttcttggatctgatgttatctactttggaatttcttcgctgcattatcttttgatttgttgttcttgt...
species | Arabidopsis thaliana |
transcript | AT1G17280.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAACGAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCGATTCAG CTATTCACTTCGTCCATAGCACGTAGATGGCAGAAAAGGCCTGTATAAAACEST: gi|116477746|gb|EG520338.1|EG520338
genomic: TAACGAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCGATTCAGgtgatcaatt ... gctgctgcagCTATTCACTTCGTCCATAGCACGTAGATGGCAGAAAAGGCCTGTATAAAAC
EST: GAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCGATTCAGCTGCTGCAGEST: gi|86056972|gb|DR352729.1|DR352729
genomic: GAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCG----A--T--T-CAGgtgatcaatt ... gc
EST: TAACGAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCGATTCAG CTATTCACTTCGTCCATAGCACGTAGATGGCAGAAAAGGCCTGTATAAAAC
genomic: TAACGAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCGATTCAGgtgatcaatt ... gctgctgcagCTATTCACTTCGTCCATAGCACGTAGATGGCAGAAAAGGCCTGTATAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAAGTGAGATTAACGAGAAACCCCAAGAGAGAAAATCTTCATCGACAAAATTCGATTCAGgtgatcaatttctttcatattttcgcaattatttcttggatctgatgttatctactttggaatttcttcgctgcattatcttttgatttgttgttcttgt
- - - - - - - - - - - - - AAGAGA