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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacgattttgactaagaaatctccattttctcacatgagtaatgatgtgatttaagattttttgttgttgtttgtatttctctagAGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATCTACTTCTGATTCCAATCATTCCAACCGTCTGATCACTACGGATCAAAGT

Basic information

species Arabidopsis thaliana
transcript AT1G17140.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052890|gb|DR348647.1|DR348647
EST:     AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAG                         AGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC
genomic: AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAGgttacgattt ... atttctctagAGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC
EST: gi|86052888|gb|DR348645.1|DR348645
EST:     AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAG                         AGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC
genomic: AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAGgttacgattt ... atttctctagAGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC
EST: gi|86052889|gb|DR348646.1|DR348646
EST:     AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAG                         AGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC
genomic: AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAGgttacgattt ... atttctctagAGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC
EST: gi|19876942|gb|AU237773.1|AU237773
EST:     AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAG                         AGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC
genomic: AATTATTGCTTATTATATCCTCAACACGAAATCAAAATGCCAAGACCAAGgttacgattt ... atttctctagAGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacatgagtaatgatgtgatttaagattttttgttgttgtttgtatttctctagAGTTTCAGAGTTGTCTCAGAGGCAAGCTCCAAGGCTGAGGTCATCGTCATCTACTTCTGATTCCAATCATTCCAACCGTCTGATCACTACGGATCAAAGT
 ttctcac  putative branch site (score: 2)
                                            tatttctct  putative PPT
                   atttaagattttttgt  TA-rich tract