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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtgattataatcatatctcagttccccggaattttccgacatgagtcatggctttggttgttgctgtaataaatgacaactgattttgtttacgtttcagTTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTCTCTGTTGTGAATTATTGCTTATTATATCCTCAACACGAAATCAAAATGC

Basic information

species Arabidopsis thaliana
transcript AT1G17140.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86052890|gb|DR348647.1|DR348647
EST:     CTTGTTGGATTTCAAATGCAAAGTTGACCTCATCTTCTTCTTCTTCGAGG                         TTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTC
genomic: CTTGTTGGATTTCAAATGCAAAGTTGACCTCATCTTCTTCTTCTTCGAGGgtaagtttta ... tacgtttcagTTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTC
EST: gi|86052889|gb|DR348646.1|DR348646
EST:     CTTGTTGGATTTCAAATGCAAAGTTGACCTCATCTTCTTCTTCTTCGAGG                         TTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTC
genomic: CTTGTTGGATTTCAAATGCAAAGTTGACCTCATCTTCTTCTTCTTCGAGGgtaagtttta ... tacgtttcagTTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTC
EST: gi|19876942|gb|AU237773.1|AU237773
EST:     CTTGTTGGATTTCAAATGCAAAGTTGACCTCATCTTCTTCTTCTTCGAGG                         TTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTC
genomic: CTTGTTGGATTTCAAATGCAAAGTTGACCTCATCTTCTTCTTCTTCGAGGgtaagtttta ... tacgtttcagTTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatggctttggttgttgctgtaataaatgacaactgattttgtttacgtttcagTTTTATACAAGTTACTCCATAAACCTTCGAGCTTCCAGCAACTTTGGCTTCTCTGTTGTGAATTATTGCTTATTATATCCTCAACACGAAATCAAAATGC
                                aactgat  putative branch site (score: 3)
                                      ttttgttt  CT-rich tract
                   tgtaataaat  TA-rich tract