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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttttatggagtttattgaagattagcagcattgttaggagtaatcagaggctacccaatgggccgggttattcactcataatcttgataattaatgtctatgtacatcagGAAAGGGTGATTGGTCTGGACTCGTGGATAAACTACAAGAGGTGGTACCTAAAGATCTACAGAATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTTAC

Basic information

species Arabidopsis thaliana
transcript AT1G15310.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124755234|gb|EH845364.1|EH845364
EST:     GGATGAGTTTGAAGTGTTTGACGTTAAACCATTTGTCAGCCGTCTCTTAG                         GAAAGGGTGATTGGTCTGGACTCGTGGATAAACTACAAGAGGTG
genomic: GGATGAGTTTGAAGTGTTTGACGTTAAACCATTTGTCAGCCGTCTCTTAGgtaactttta ... tgtacatcagGAAAGGGTGATTGGTCTGGACTCGTGGATAAACTACAAGAGGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgggccgggttattcactcataatcttgataattaatgtctatgtacatcagGAAAGGGTGATTGGTCTGGACTCGTGGATAAACTACAAGAGGTGGTACCTAAAGATCTACAGAATGAACTTGTAGAAAATCTCTCTCAGGGTAACTTTAC
                                 aattaat  putative branch site (score: 3)
                      ataatcttgataatta  TA-rich tract