Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATCTTCAAGGAACTCTGTAGGATGCTGGATCCAGGAAAGCCTGCCTTTGCCCCCAAAAAGGCCAAACCTAGTGTAGTGATGTTCGTCGGTTTACAAGgtcaggtttctgtaagatgctatactgttttttgcacagtgtttgattgagtttggtgagtagatagatcacatttgagtttttgactatgtttag

Basic information

species Arabidopsis thaliana
transcript AT1G15310.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125325257|gb|EL339337.1|EL339337
EST:     AGTGATGTTCGTCGGTTTACAAG                         GTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGA
genomic: AGTGATGTTCGTCGGTTTACAAGgtcaggtttc ... ctatgtttagGTGCTGGAAAAACCACAACATGTACCAAGTATGCTTACTATCATCAGAAGA