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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaatccacaacgcaattagatttttgattttagttagttcgatataatttattgtcactagtaaatcgtttcagTTAAACCTGTCAATAAGACATCTACTGTCGCTACAAATATAGCAAGTATGACTCAGGCAGCACCAGGTCCGCTTCCTCGGAGGGAAAATCTGAGTTCTGA

Basic information

species Arabidopsis thaliana
transcript AT1G15240.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124714192|gb|EH805594.1|EH805594
EST:     TTGAGACGCTAACAG                         TTAAACCTGTCAATAAGACATCTACTGTCGCTACAAATATAGCAAGTATGA
genomic: TTGAGACGCTAACAGgtgagtaatc ... atcgtttcagTTAAACCTGTCAATAAGACATCTACTGTCGCTACAAATATAGCAAGTATGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttgattttagttagttcgatataatttattgtcactagtaaatcgtttcagTTAAACCTGTCAATAAGACATCTACTGTCGCTACAAATATAGCAAGTATGACTCAGGCAGCACCAGGTCCGCTTCCTCGGAGGGAAAATCTGAGTTCTGA
  ttttgat  putative branch site (score: 4)
                                              tcgtttc  putative PPT
       attttagttagttcga  TA-rich tract