Sequence
atgc intronic sequence ATGC exonic sequence...ctattcttccatgttaactaaatgtgaatgtttgctttgcattgaagtgattctgctgttttccttattctgcgtattatcctttctctactttgctcagAAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTGGATTCTCAG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G15240.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G15240.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA08G21950.1 (Glycine max), 3'ss of exon 9
ctattcttccatgttaactaaat-gtgaatgtttgctttgcattgaagtgattct-gctgttttccttattctgcgtattatcctttctctactt--tgctcagAAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTGGATTCTCAG
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----ccttttgtgtgtatcatgtagagttctttttctgtctatgctaatgattttcaatgattcaaccaatatttttgttgactcgtgacttattggtcctcagAAACTCATGCAACTACCAACAGTTTCGGAATCAATTGAAGTATGGGACTTTCTCAGTGTTGATTCTCAG
upper sequence: AT1G15240.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA07G00690.1 (Glycine max), 3'ss of exon 7
ctattcttccatgttaactaaatgtgaatgtttg-ctttgcattgaagtgattct-gctgttttccttattctgcgtattatcctttctctactt-tgctcagAAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTGGATTCTCAG
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---tccttttgcatctatcgtgtagcattgtttttctgtctatgctaacaattttcaatgattcaaccaatattttgttgacgcatggcttattggccctcagAAACTTATGCAATTACCAACAGTTTCGGAATCAATTGAAGTATGGGACTTTCTCAGTGTTGATTCTCAG
upper sequence: AT1G15240.3 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: Vv09s0002g04430.t01 (Vitis vinifera), 3'ss of exon 7
ctattcttccatgttaactaaatgtgaatgtttgctttg-cat-tgaagtgattctgctgttttccttat-tctgcgt---attatcctttctctactttgctcagAAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTGGATTCTCAG
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------tgttgtaactaacaattttacttttctgtcctgacatattgtcttgttttcttatgctcccaatctccaaatgacattttcatgtgtttctgttcttcagAAGCTCTTGCAACTTCCCACAATTTCAGGATCAATTGAAGTTTGGGACTTCCTTAGTGTAGATTCTCAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtgattctgctgttttccttattctgcgtattatcctttctctactttgctcagAAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTGGATTCTCAG
ttatcctttctctact CT-rich tract
tattat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctattcttccatgttaactaaatgtgaatgtttgctttgcattgaagtgattctgctgttttccttattctgcgtattatcctttctctactttgctcagAAGCTTTTGCAGCTACAACGAATTTCAGGATCAATTGAAGTTTGGGACTTCCTCAGTGTGGATTCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG