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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATGGAGAGTGTGAGCGCCAAGAAAGGAATGGTTCTTCCTTTCACTCCTCTAGCTATGTCATTTGACGATGTTAAATACTTTGTTGACATGCCTGCGgtaatactttgaaaactagttaaacttattgttattattaatagaaacaaaaaaagaaactcatatagaattggatggtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G15210.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g36090.2 (Oryza sativa), 5'ss of exon 10
TGAGATGGAGAGTGTGAGCGCCAAGAAAGGAATGGTTCTTCCTTTCACTCCTCTAGCTATGTCATTTGACGATGTTAAATACTTTGTTGACATGCCTGCGgtaa---tactttga---aaactagttaaacttattgt--tattattaatagaaacaaaaaaagaaactcatatagaattggatggtgcag----------------
||  |   |    |   |  | |  | ||||||||||||||| || ||||||||| | ||||| ||||| ||||| || |||| ||| ||||||||||| || |   ||| |      ||  |   |   | | ||||  | ||     | | | |   ||  |||| |  | ||  ||| ||| | |                   
TGGTAGCAATGAAGCTGGTCCAAGAAGAGGAATGGTTCTTCCATTTACTCCTCTATCCATGTCTTTTGATGATGTGAACTACTATGTCGACATGCCTGCAgtgagtttacctatgcttaacttctcttggcatcttgtcctgttccctgtcgtatcctcaatcgaaaatt-tgtaatatttgattgagattaatgttttatacatag

upper sequence: AT1G15210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G029506_T01 (Zea mays), 5'ss of exon 14
TGAGATGGAGAGTGTGAGCGCCAAGAAAGGAATGGTTCTTCCTTTCACTCCTCTAGCTATGTCATTTGACGATGTTAAATACTTTGTTGACATGCCTGCGgtaata----ctttgaaaact------agttaaacttattgttattatta-----------------atagaaacaaaaaaagaaactcatatagaattggatggtgcag----
||  |   |    |      | |  | ||||||||||||||| ||||  ||||| |||||||| |||||  |||| || |||| |||||||||||||||||| |      ||| ||  | |      ||||   | | |     || |||                  ||     ||| |  |||||| ||   |||||  || ||        
TGGCAGCAATGAAGCTGCTCCAACAAGAGGAATGGTTCTTCCATTCAACCCTCTTGCTATGTCTTTTGATAATGTGAACTACTATGTTGACATGCCTGCGgtgagttgaccttcgagtattctcagcagttgttcctgtcccatttcttaccttcttcaatgtgcttgtacggtaaaatatggaaactgatggggaattctattgtttgcccag

upper sequence: AT1G15210.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv09s0002g03560.t01 (Vitis vinifera), 5'ss of exon 4
TGAGATGGAGAGTGTGAGCGCCAAGAAAGGAATGGTTCTTCCTTTCACTCCTCTAGCTATGTCATTTGACGATGTTAAATACTTTGTTGACATGCCTGCGgtaatactttgaaaacta-gttaaacttattgttattatta-atagaaa-caaaaaaagaaactcatatagaattggatggtgcag--------------------------------------
 |      |  | ||     |||| | ||||||| | ||||| |||||||| || || ||||| ||||||||||| || |||| ||| ||||||||  |||||| | |       ||  |||    ||| |      || | || ||   ||||   ||||  | | |  |    ||       |                                       
GGCCGCAAATGGGGTTGCTCCCAAAAGAGGAATGATCCTTCCCTTCACTCCCCTCGCCATGTCCTTTGACGATGTGAACTACTATGTGGACATGCCACCGgtaagaatccctttcctttgttggtgttactacctacataacatggatttcaaatggagaattttagactgtgaaggccaactaacttaactgccaacacaactaactctgttgatcataacag