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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttatttcttcatgatacatcttacctttttttcatttttctgattgatttgttagtgtaatcgaaaaattaattaacacttgttacaaattaattttcgtattttagGATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGGTGGAGTGGCGATGGGTGCTCCAGCCTTCCAAGGCGGCATGACCCGCTAAGATTGATTTCTCTA

Basic information

species Arabidopsis thaliana
transcript AT1G14880.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125024135|gb|EL096404.1|EL096404
EST:     GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTG                         GATGGGCAGGGAA
genomic: GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTGgtaatttatt ... cgtattttagGATGGGCAGGGAA
EST: gi|125092971|gb|EL150738.1|EL150738
EST:     GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTG                         GATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGGTGGAGTGGCGATGG
genomic: GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTGgtaatttatt ... cgtattttagGATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGGTGGAGTGGCGATGG
EST: gi|125163134|gb|EL189904.1|EL189904
EST:     GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTG                         GATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGG
genomic: GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTGgtaatttatt ... cgtattttagGATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGG
EST: gi|19878915|gb|AU239746.1|AU239746
EST:     GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTG                         GATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGGTGGAGTGGCGATGG
genomic: GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTGgtaatttatt ... cgtattttagGATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGGTGGAGTGGCGATGG
EST: gi|125277207|gb|EL291292.1|EL291292
EST:     GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTG                         GATGGGCAGGGAAC
genomic: GACCCAACAATACCGTGAACTCAAGCACCGCGGTTTCGATATGAGCCTTGgtaatttatt ... cgtattttagGATGGGCAGGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgtaatcgaaaaattaattaacacttgttacaaattaattttcgtattttagGATGGGCAGGGAACGCAGAGAAACAACAAAATCAAGGTGGAGTGGCGATGGGTGCTCCAGCCTTCCAAGGCGGCATGACCCGCTAAGATTGATTTCTCTA
                                         ttttcgt  CT-rich tract
           aaaaattaattaacac  TA-rich tract