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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTATCACATTATGTTGTCCATGTATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaacttataattcaataaatcatagaaaaaggttttgccacatttggcgggagcaagcgctaatgataaataattgttggttcgaaaaatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G14880.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124755858|gb|EH845988.1|EH845988
EST:     TGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAAT                         CGTGTTGTGCGGCTGGAGCATTATA
genomic: TGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaact ... aaaatttcagCGTGTTGTGCGGCTGGAGCATTATA
EST: gi|125263072|gb|EL277157.1|EL277157
EST:     TATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAAT                         CGTGTTGTGCGGCTGGAGACATTATACATGTTGATAGACTTAATAAC
genomic: TATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaact ... aaaatttcagCGTGTTGTGCGGCTGGAG-CATTATACATGTTGATAGACTTAATAAC
EST: gi|19878915|gb|AU239746.1|AU239746
EST:     ATGTATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAAT                         CGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTT
genomic: ATGTATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaact ... aaaatttcagCGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGTATCACATTATGTTGTCCATGTATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaacttataattcaataaatcatagaaaaaggttttgccacatttggcgggagcaagcgctaatgataaataattgttggttcgaaaaatttcag

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