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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctccaaacactgtctacttagttttctccctcaagagtgtaagaacaagccctttaatactgtttggatgatctcttccatagGTATACATTCAGTACGATCTGAACAAAAGCAATGCAGAACTTGCTCTCGACTATGGTTTTGTGGAATCAAACCCTAAACGGAACTCATATACTTTAACAA

Basic information

species Arabidopsis thaliana
transcript AT1G14030.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14030.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GRMZM2G418752_T02 (Zea mays), 3'ss of exon 4
--------------------------------------------gtatgctccaaacactgtctact-tagt-----tttctccctcaagagt---gtaagaacaagccctttaatact--gtttggatgatctcttccatagGTATACATTCAGTACGATCTGAACAAAAGCAATGCAGAACTTGCTCTCGACTATGGTTTTGTGGAATCAAACCCTAAACGGAACTCATATACTTTAACAA
                                             |    | ||    || | | |  ||||      |||    ||||| |    |  | |||  ||  |||   |||  |    ||   |  | |  | || |||| || |||||||||||| |||| || ||||| ||||| || || |||||||| |||||||||||||| ||   | || | || | |||| | ||  
gtacagatgatgttccatttttctgcactaggtgcactgttttcatggctttcagcatctatatgcaatagtggatgcttcaagttcaagtgacaagctaaaacgtgcaatttgtaactgagcactgagatttgcatttacagATATATATCCAGTACGATCTGGACAAGAGTAATGCTGAACTGGCACTAGACTATGGGTTTGTGGAATCAAATCCATCAAGGGATTCGTTTACTGTGACCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcaagagtgtaagaacaagccctttaatactgtttggatgatctcttccatagGTATACATTCAGTACGATCTGAACAAAAGCAATGCAGAACTTGCTCTCGACTATGGTTTTGTGGAATCAAACCCTAAACGGAACTCATATACTTTAACAA
                       ctttaat  putative branch site (score: 4)
                                           tctcttccat  putative PPT
                        tttaatact  TA-rich tract