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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACTTGATGACTTCATATGGGCGTTTGGGATCCTCAAGTCGAGGGCTTTTTCTCGTCTCCGTGGCCAAAACCTTGTCTTGATCCCTCTTGCAGACTTGgcaagctatcttcttgtttcagatattgtctagtgaaaacttcagaaaataatcttcattcattgatgcttggctcagcagagaatctctgacttcaatgtttgaatttgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G14030.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G14030.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0182g00050.t01 (Vitis vinifera), 5'ss of exon 3
AACACTTGATGACTTCATATGGGCGTTTGGGATCCTCAAGTCGAGGGCTTTTTCTCGTCTCCGTGGCCAAAACCTTGTCTTGATCCCTCTTGCAGACTTGgcaagctatcttcttgt---ttcagatattgtct-----agtgaaaact----tcagaaaataatcttcattcattgatgctt-----ggctcagcagagaatctctgacttcaatgtttgaatttgaacag---------------------------------------------------------------
|||| | ||||||||| ||||||| ||||||||  | |  || ||||| ||||| || || ||||| ||||| ||||| |||||||||||||||||||||| ||| | | || ||     |||  || | || |     ||  | || |    | |||| | |||       |    ||| ||     || |||| |    |||     | |  ||   ||     ||| |                                                                
AACATTGGATGACTTCTTATGGGCATTTGGGATATTGAGATCCAGGGCATTTTCACGCCTTCGTGGTCAAAATCTTGTTTTGATCCCTCTTGCAGACTTGgtaagatcttttttttccccttccaatttggttttcagaagcaataagtgaagtaagaagagaatgcctgaacgaatatggtttaagtggttcagtatgttatcaactccctacatcaatgggcaagaagaagatttaatttaaactgccttctgttgtaaattttatctcatagaaatctgatctgtggatcag