1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagtaaaaccaacttcatatcttcaacactgttattttcttcccacgcaaaaggaaattttgaaatgctaaatccgtttacttcttgtataatagGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCAGTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACA
species | Arabidopsis thaliana |
transcript | AT1G13060.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGGTACAATGATTGCTGGATGGGACGAAACT GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACEST: gi|164150905|gb|ES062076.1|ES062076
genomic: TTGGTACAATGATTGCTGGATGGGACGAAACTgtcagtaaaa ... tgtataatagGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGAC
EST: GTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACT GGTCCCGGACTATACTATEST: gi|116463327|gb|EG505919.1|EG505919
genomic: GTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACTgtcagtaaaa ... tgtataatagGGTCCCGGACTATACTAT
EST: GTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACT GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACEST: gi|124737413|gb|EH828815.1|EH828815
genomic: GTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACTgtcagtaaaa ... tgtataatagGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGAC
EST: TGATTGCTGGATGGGACGAAACT GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACEST: gi|86079424|gb|DR375181.1|DR375181
genomic: TGATTGCTGGATGGGACGAAACTgtcagtaaaa ... tgtataatagGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGAC
EST: GTGGAAT-GGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACT GGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGAC
genomic: GTGGAATGGGACTTTCTGTTGGTACAATGATTGCTGGATGGGACGAAACTgtcagtaaaa ... tgtataatagGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGAC
tcccacgcaaaaggaaattttgaaatgctaaatccgtttacttcttgtataatagGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCAGTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACA
tgctaaa putative branch site (score: 2)
tccgtttacttctt CT-rich tract
aaattttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtaaaaccaacttcatatcttcaacactgttattttcttcccacgcaaaaggaaattttgaaatgctaaatccgtttacttcttgtataatagGGTCCCGGACTATACTATGTCGACAACGAAGGAGGACGGCTCAAGGGAGACAGGTTTTCAGTCGGTTCTGGTTCACCATATGCTTACGGTGTGCTGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA