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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTCTTCTTCTTCTCGTCGTCGTTTGTCACTTTAGAGCTACTTCTTCTTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAGgtacgtttccgatccttaatcgagctctagtatcattgatttggctatgttaatgaagatgagggtttagggttcttatacagacaccaatgtatctcgt...

Basic information

species Arabidopsis thaliana
transcript AT1G13060.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164118053|gb|ES154888.1|ES154888
EST:     CCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAG                         GGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTCGAGACTTCCATGCCTA
genomic: CCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAGgtacgtttcc ... gattctgtagGGTTTGCAAAGATGAAGCTTGATACTAGTGGGTTCGAGACTTCCATGCCTA
EST: gi|124960409|gb|EL035079.1|EL035079
EST:     TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAG                         GGTTTGCAAAGATGAAGCTTGA
genomic: TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAGgtacgtttcc ... gattctgtagGGTTTGCAAAGATGAAGCTTGA
EST: gi|164075733|gb|ES075273.1|ES075273
EST:     TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAG                         GGTTTGCAAAGA
genomic: TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAGgtacgtttcc ... gattctgtagGGTTTGCAAAGA
EST: gi|124789205|gb|EH878884.1|EH878884
EST:     TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAG                         GGTTTGCAAAGAT
genomic: TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAGgtacgtttcc ... gattctgtagGGTTTGCAAAGAT
EST: gi|124741968|gb|EH833130.1|EH833130
EST:     TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAG                         GGTTTGCAAAGA
genomic: TTCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATACTTTTCTCCAGTAAGgtacgtttcc ... gattctgtagGGTTTGCAAAGA
EST: gi|163984776|gb|ES204065.1|ES204065
EST:     TCTTCTCTGCTAAGCCTTTCCTCTCGACTTGATTACTTTTCTCCAGTAAG                         GGTTTGCAAAGATGAAGC
genomic: TCTTCTCTGCTAAGCCTTTCCTCTCGACTTGAT-ACTTTTCTCCAGTAAGgtacgtttcc ... gattctgtagGGTTTGCAAAGATGAAGC