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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCTCCCGATCGTCTCCACGTCTCTTGGGACTTTCACGAAGCTTCGTTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggtttaaagctttgaacttttgaaataccctatttccaatttgagctttttcgctttcctgattcgatgattaagtatttaagtagctgaatttgatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G12520.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125222332|gb|EL236417.1|EL236417
EST:     CGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCTTCTT
genomic: CGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTT
EST: gi|125264550|gb|EL278635.1|EL278635
EST:     TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCA
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCA
EST: gi|124778915|gb|EH868858.1|EH868858
EST:     TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCTTCTTACTGAGTT
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTTACTGAGTT
EST: gi|125272106|gb|EL286191.1|EL286191
EST:     TTAGCTCTCCGATGGCGACTGCTCACACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCT
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCT
EST: gi|124705762|gb|EH797164.1|EH797164
EST:     TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCTTCTT
genomic: TTAGCTCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTT
EST: gi|125206919|gb|EL221873.1|EL221873
EST:     TCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCTTCTT
genomic: TCTCCGATGGCGACTGCTCTCACTTCTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTT
EST: gi|124711089|gb|EH802491.1|EH802491
EST:     CTGATCGTAATCTCCATCAG                         GAGGATCGAGCCATGCCTCAGCTTCTT
genomic: CTGATCGTAATCTCCATCAGgttttggttt ... tgatttgcagGAGGATCGAGCCATGCCTCAGCTTCTT