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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacttttttttgtctcagtgatgtctggatatgtcaagttatttcttcaaaagttggatcaatcaatgatgtcttatctgtgatcactgatcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGAAAGCGTTCCTTTGCCCTTGGTTTGTGTTCTTGAGTGTGCTTAATTGTGT

Basic information

species Arabidopsis thaliana
transcript AT1G11360.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124749324|gb|EH839454.1|EH839454
EST:     ATAAGCAGTAGCAGCAAG                         GCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA
genomic: ATAAGCAGTAGCAGCAAGgttgactttg ... tcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA
EST: gi|116446855|gb|EG489447.1|EG489447
EST:     GGGAGATAAGGATGAGTACCATGATGCTTCGGATAAGCAGTAGCAGCAAG                         GCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA
genomic: GGGAGATAAGGATGAGTACCATGATGCTTCGGATAAGCAGTAGCAGCAAGgttgactttg ... tcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA
EST: gi|125297960|gb|EL312045.1|EL312045
EST:     CTTCGGATAAGCAGTAGCAGCAAG                         GCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACT-AGAAAGAAAAGA
genomic: CTTCGGATAAGCAGTAGCAGCAAGgttgactttg ... tcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaaagttggatcaatcaatgatgtcttatctgtgatcactgatcttgtgcagGCTTTCATGTTGCAGAAGGAGACCTCCCTAAGGAGACTTAGAAAGAAAAGAAAGCGTTCCTTTGCCCTTGGTTTGTGTTCTTGAGTGTGCTTAATTGTGT
                                       cactgat  putative branch site (score: 3)
               aatcaat  TA-rich tract