Sequence
atgc intronic sequence ATGC exonic sequencegtaatccctctttagaattttggtactaacaacactcaaaaattaactgaacagcgtagtaaagagtttgatatactacaatcttacagGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTTGCAACTAGAGACAAGGAGAGGATCGACGCAGCTATTCTCAAATATACAT
Basic information
species | Arabidopsis thaliana |
transcript | AT1G07700.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19799626|gb|AU230916.1|AU230916EST: AGATGAATATGATGAACAATCTGAAGGTCGCAGAAAGGCTCCGTATCAAG GCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTT
genomic: AGATGAATATGATGAACAATCTGAA-GTCGCAGAAAGGCTCCGTATCAAGgtaatccctc ... aatcttacagGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTT
EST:
gi|86078935|gb|DR374692.1|DR374692EST: TAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTATCAAG GCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTT
genomic: TAGATGAATATGATGAACAATCTGAAGTCGCAGAAAGGCTCCGTATCAAGgtaatccctc ... aatcttacagGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcaaaaattaactgaacagcgtagtaaagagtttgatatactacaatcttacagGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTTGCAACTAGAGACAAGGAGAGGATCGACGCAGCTATTCTCAAATATACAT
aaattaact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatccctctttagaattttggtactaacaacactcaaaaattaactgaacagcgtagtaaagagtttgatatactacaatcttacagGCGGTTCCTCTCTTCCACTTCTACAAAAACGGAGTTCTCTTAGAATCATTTGCAACTAGAGACAAGGAGAGGATCGACGCAGCTATTCTCAAATATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT