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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATCACCTAATGGGAAAAAGTATGCTGGACTTTCTAGTGCTTTGGGTACTTTAACTTGGGAAAAGCCTCTATCTTCTGAGTTTGAGCAATTGGCTAGgtacatatgatcctaggtctctttgtttcttttgctagatcaagctagagtagttgacttaaggtgtgttgggttaaattgattaacag

Basic information

species Arabidopsis thaliana
transcript AT1G07040.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125230704|gb|EL244789.1|EL244789
EST:     ACTTTAACTTGGGAAAAGCCTCTATCTTCTGAGTTTGAGCAATTGGCTAG                         GGAAAGTGAATACGCAGCATGGACCCTTGT
genomic: ACTTTAACTTGGGAAAAGCCTCTATCTTCTGAGTTTGAGCAATTGGCTAGgtacatatga ... tgattaacagGGAAAGTGAATACGCAGCATGGACCCTTGT
EST: gi|86079974|gb|DR375731.1|DR375731
EST:     TCTGAGTTTGAGCAATTGGCTAG                         GGAAAGTGAATACGCAGCATGGACCYTTGTCAATGGATATGCACTTAACCA
genomic: TCTGAGTTTGAGCAATTGGCTAGgtacatatga ... tgattaacagGGAAAGTGAATACGCAGCATGGACCCTTGTCAATGGATATGCACTTAACCA