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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatatactgtcattggttttgaccctagattatgttatgagctttgaaggcaatttcttttgttttcagGATGTAATCAGAAAATACACGGAAGCATCACCTAATGGGAAAAAGTATGCTGGACTTTCTAGTGCTTTGGGTACTTTAACTTGGGAAAAGCCTCTATCTT

Basic information

species Arabidopsis thaliana
transcript AT1G07040.1
intron # 3
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttttgaccctagattatgttatgagctttgaaggcaatttcttttgttttcagGATGTAATCAGAAAATACACGGAAGCATCACCTAATGGGAAAAAGTATGCTGGACTTTCTAGTGCTTTGGGTACTTTAACTTGGGAAAAGCCTCTATCTT
  ttttgac  putative branch site (score: 3)
                                       tttcttttgttttc  putative PPT
                                     aatttcttttgtttt  TA-rich tract