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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGATGCCGTTCATTGCGACTCGAGGATATGACAGTGTAGTCTGGAGCCGACTTTACTCAAGAGAGACTTCTGAGCTTGAGGACTATCAAATTGAACAGgcaagtagaattttaatcaccaaaatctcaaaactgctaagacagatatcatcatcagcttggtttaatgtgtttcctgacttctttttcttatcag

Basic information

species Arabidopsis thaliana
transcript AT1G07010.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085928|gb|DR381687.1|DR381687
EST:     GAGAGACTTCTGAGCTTGAGGACTATCAWATTGAACAG                         GTAAATAAAATTCTTCACGACACTCTTGAAGCTGTAGGTGCCAAAGCGATG
genomic: GAGAGACTTCTGAGCTTGAGGACTATCAAATTGAACAGgcaagtagaa ... ttcttatcagGTAAATAAAATTCTTCACGACACTCTTGAAGCTGTAGGTGCCAAAGCGATG
EST: gi|116396060|gb|EG438652.1|EG438652
EST:     GACTTTACTCAAGAGAGACTTCTGAGCTTGAGGACTATCAAATTGAACAG                         GTAAATAAAATTCTTCACGACACTCTTGAAGCTGTAGGTGTCAAAGCGATG
genomic: GACTTTACTCAAGAGAGACTTCTGAGCTTGAGGACTATCAAATTGAACAGgcaagtagaa ... ttcttatcagGTAAATAAAATTCTTCACGACACTCTTGAAGCTGTAGGTGCCAAAGCGATG
EST: gi|125162305|gb|EL189075.1|EL189075
EST:     CTCAAGAGAGACTTCTGAGCTTGAGGACTATCAAATTGAACAG                         GTAAATAAAAATTCTTCACGACACTCTTGAAGCTGTAGGTGCCAAAGCGAT
genomic: CTCAAGAGAGACTTCTGAGCTTGAGGACTATCAAATTGAACAGgcaagtagaa ... ttcttatcagGTAAAT-AAAATTCTTCACGACACTCTTGAAGCTGTAGGTGCCAAAGCGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGATGCCGTTCATTGCGACTCGAGGATATGACAGTGTAGTCTGGAGCCGACTTTACTCAAGAGAGACTTCTGAGCTTGAGGACTATCAAATTGAACAGgcaagtagaattttaatcaccaaaatctcaaaactgctaagacagatatcatcatcagcttggtttaatgtgtttcctgacttctttttcttatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT