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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGTTATAGAGGCAGACGCGTTTAAGGAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGAATTGgtacgttgttcttagttctagctagccatcctcgattgtgtatatatatttggctttaacatgctacatttctggttatttccttatatatattttag

Basic information

species Arabidopsis thaliana
transcript AT1G04280.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G34750.1 (Glycine max), 5'ss of exon 5
GGTGGTTATAGAGGCAGACGCGTTTAAGGAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGAATTGgtacgttgttct-tagttctagctagccatcctcgattgtgtatatatatttggctttaacatgctac-att-tctggttatttccttatatatattttag-
 |||||  | |||||||| || || |||||||  || || || |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||| | |  | | |    |  |    ||||  |  ||| |    |||| ||     | |||   | || ||| | ||   |     | |   || || ||| 
TGTGGTGGTTGAGGCAGATGCTTTCAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaaccatgacctccatgtt--attattatcatatcttcccactaaactgaccactattgtatgtgcagcatgtgactaatgttataga

upper sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G34760.1 (Glycine max), 5'ss of exon 4
GGTGGTTATAGAGGCAGACGCGTTTAAGGAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGAATTGgtacgttgttcttagttctagctagccatcctcgattgtgtatatatatttggctttaacatgctacatt--tctggttatttccttatatatattttag---
 |||||  | |||||||| || ||||||||||  || || || |||||||| |||||||| ||||||||||| ||||| ||| | |||||||||||||||||| | |  | |  |  | |  |  || |||  | |  | |    || ||     | |||  |  ||  |  | ||   |     | |   || || |||   
TGTGGTGGTTGAGGCAGATGCTTTTAAGGAGAGTGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGATCCAAACTGCTGAATTGgtatgcttctgtgtgaacca--tgacc-tccatgttattattatcattttcccactaaactggtcactatcgtatgtgcagcatgtgactaatgttatagaaa

upper sequence: AT1G04280.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G32900.2 (Glycine max), 5'ss of exon 2
GGTGGTTATAGAGGCAGACGCGTTTAAGGAGACGGATGTAATTTATAGAGCTCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGAATTGgtacgttgttcttagttctagctagccatcct-cgattgtgtatatatatttggctttaacatgctacatttctggttatttccttatatatattttag-----------------------------------------------------------------------------------------------------
 |||||  | ||| | || || |||||||| |  || || || |||||||| |||||||| ||||||||||| ||||| ||||| |||||||||||||||||| | |  | |  |  |  |    ||||  |   ||| |   | |     |  || |  ||  ||| || | ||   |     | |   || || |||                                                                                                     
TGTGGTGGTTGAGCCGGATGCTTTTAAGGAAAATGACGTCATATATAGAGCCCTTAGCTCCAGAGGTCACCATGATGACATGCTCCAAACTGCTGAATTGgtatgcttctgtgtgaacatgacctccatgttattattatcatttttccactaactctc-cacacta-atgtatgtgcagcatgtgactaatgttataggaatccaaaatatattatcaaaatggatgagatatattagatccttataagctatttttaacaaatgattgctttaattaaatttatcaaaatctgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164139704|gb|ES201173.1|ES201173
EST:     TCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTGTAATTG                         GTTCATCAATCATCAACGG
genomic: TCTTAGCTCTAGAGGTCACCACGATGATATGCTTCAAACTGCTG-AATTGgtacgttgtt ... tatattttagGTTCATCAATCATCAACGG