1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTCTCCGGTGGCTCATAACAAACGAAGTCCCGTCCTTCTCCTTATGGGCGGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTAGAgtataactcttttttcttgtatttctttaacatatggtggttataagcctacttaatctttctttaaataaccagaaataatattttgtag
species | Arabidopsis thaliana |
transcript | AT1G04280.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTAGA GTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAGAGGCAGACGCEST: gi|164209713|gb|ES018632.1|ES018632
genomic: GGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTAGAgtataactct ... tattttgtagGTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAGAGGCAGACGC
EST: GGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTAGA GTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAEST: gi|124729674|gb|EH821076.1|EH821076
genomic: GGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTAGAgtataactct ... tattttgtagGTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATA
EST: AGCACCGTCCTCAAAGATATCTTCCTAGA GTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAGAGGCAGACGC
genomic: AGCACCGTCCTCAAAGATATCTTCCTAGAgtataactct ... tattttgtagGTCGTTTTGGTCGGAGGCACAGGCCGACGCGGTGGTTATAGAGGCAGACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCTCCGGTGGCTCATAACAAACGAAGTCCCGTCCTTCTCCTTATGGGCGGAGGAATGGGCGCAGGAAAGAGCACCGTCCTCAAAGATATCTTCCTAGAgtataactcttttttcttgtatttctttaacatatggtggttataagcctacttaatctttctttaaataaccagaaataatattttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA