Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCAAGACTTTCAACATTTGGGTTAATGAAGAATAGTCGGGATGGGAAAAGTTATAGCACAAATCTTGCTTTTACCCCACCTGAGTATCTACGAACTGgtgaaattgatttgcaccctcctcgtaggtcatattatttccaacaatttctacaacttgagacttaagtgtgtgttgatacag

Basic information

species Arabidopsis thaliana
transcript AT1G01740.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 6
AATCCAAGACTTTCAACATTTGGGTTAATGAAGAATAGTCGGGATGGGAAAAGTTATAGCACAAATCTTGCTTTTACCCCACCTGAGTATCTACGAACTGgtgaaattgatttgcaccctcctcgtaggtcatattatttccaacaat-ttctacaacttgagacttaagtgtgtgttgatacag--------------------------------------------------------------------------------
||||| || ||||| |  |||||  | ||||| |||||  |||||||||||||||||||||||||| | || |||||||| || ||||||||  ||||||||     | ||    ||  |  | ||  ||  | |  ||       || ||| |||   | | | | || ||    |   ||  |                                                                                
AATCCTAGGCTTTCGAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTCAGAACTGgtatgccttata---acagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtag

upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 6
AATCCAAGACTTTCAACATTTGGGTTAATGAAGAATAGTCGGGATGGGAAAAGTTATAGCACAAATCTTGCTTTTACCCCACCTGAGTATCTACGAACTGgtgaaattgatttgcaccctcctcgtaggtcatattatttccaacaatttctacaacttgagacttaagtgtgtgttgatacag---------------------------------------------------------------------------------
||||| || |||||||  |||||  | ||||| |||||  |||||||||||||||||||||||||| | || |||||||| || ||||||||  |||||||| |       |  ||   |  | ||  ||  | |  ||       || |  |  |||  | | | || ||    |   ||  |                                                                                 
AATCCTAGGCTTTCAAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTTAGAACTGgt-atgccatataacagattttttgttagttttgtccttctttcttatgttcaacact-aatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtag

upper sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 6
AATCCAAGACTTTCAACATTTGGGTTAATGAAGAATAGTCGGGATGGGAAAAGTTATAGCACAAATCTTGCTTTTACCCCACCTGAGTATCTACGAACTGgtgaa--------attgatttgcaccctcctcgtaggtca-----tattatttccaa-----caatttctacaacttgagacttaagtgtgtgttgatacag
||||| ||||| ||    |||||  | ||||| |||||| ||||||| ||||||||||| || ||||| || ||||| || ||||||||| |  ||||||||           |||||  |  |   |  |  || ||||     ||||  ||  ||     | || | || | ||||  | | || | || |   | |  |
AATCCTAGACTCTCTTGCTTTGGCCTGATGAAAAATAGTAGGGATGGAAAAAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGgtatgtacctcttattgaaata-attttaattttatgtcaaaaagtatttgttttaaggttcctatgtatatatcttgcaattcaa-tttgagggaaaagtg