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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaattgatttgcaccctcctcgtaggtcatattatttccaacaatttctacaacttgagacttaagtgtgtgttgatacagGGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCAT

Basic information

species Arabidopsis thaliana
transcript AT1G01740.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G01740.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA03G01300.2 (Glycine max), 3'ss of exon 6
--------------------------------------------------------------------------gtgaaattgatttgcaccctcctcgtaggtcatattatttccaa--caatttctaca--acttgagacttaagtgtgtgttgatacagGGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCAT
                                                                           || |    ||||  |   |     |   | || || |     |    | |  ||||  | ||   |  |   |   |  |  |  ||||||| | ||| |||| ||||| || || ||||||||||||||||||||||| |||||||  || |||||||| || || || |||
gtatgccttataacagtttttgttagttttttccttctggcttatgttcaacactataatattcaattgaaaatctgtatcgcatttaaaaatttacaatcatttatgttttagtagagtggagtgatacatgatttcttatatctcttctttgttttgtagGGAGAGTAACACCAGAAAGTGTAATATATAGTTTTGGCACTCTTCTGCTTGACCTTCTCAGTGGGAAGCATATCCCCCCAAGTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatattatttccaacaatttctacaacttgagacttaagtgtgtgttgatacagGGAGAATCACAGCAGAGAGTGTGATTTACAGTTTTGGCACTCTTCTGCTTGATCTTCTCACCGGAAAGCATATTCCTCCTAGCCAT
                                            tgttgat  putative branch site (score: 4)
             aacaattt  TA-rich tract