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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAGCTGTGGTGGAAAAAAAGATAGCTGATGCGAAGTCACAAGGGAAGGAAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgcttgagcgtatctaataaactatatacctgtttggaactatgcacagtgtagcccgggtagccattcagttgtttccgtgaaagatggaggtt...

Basic information

species Zea mays
transcript GRMZM2G155314_T02
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71772873|gb|DR970796.1|DR970796
EST:     AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATG                         GTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
genomic: AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgctt ... ggaaatgcagGTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
EST: gi|78118020|gb|DV536407.1|DV536407
EST:     AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATG                         GTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
genomic: AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgctt ... ggaaatgcagGTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
EST: gi|5456056|gb|AI833746.1|AI833746
EST:     AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATG                         GTACTAGAGAACGACCTTGATGCTACCGCGTTTGCCAACCGGAGCCTATGC
genomic: AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgctt ... ggaaatgcagGTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
EST: gi|78027423|gb|DV495810.1|DV495810
EST:     AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATG                         GTACTAGAGAACGACCTTGATGCTACCGCGTTTGCCAACCGGAGCCTATGC
genomic: AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgctt ... ggaaatgcagGTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
EST: gi|78083173|gb|DV511566.1|DV511566
EST:     AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATG                         GTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
genomic: AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgctt ... ggaaatgcagGTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
EST: gi|78107759|gb|DV526177.1|DV526177
EST:     AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATG                         GTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
genomic: AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgctt ... ggaaatgcagGTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
EST: gi|74242115|gb|DT650029.1|DT650029
EST:     AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATG                         GTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC
genomic: AAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgctt ... ggaaatgcagGTACTAGAGAACGACCTTGATGCTACTGCGTTTGCCAACCGGAGCCTGTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCAGCTGTGGTGGAAAAAAAGATAGCTGATGCGAAGTCACAAGGGAAGGAAGCTTTCGCAAGGGGAGAGTACCCTGCAGCAGTATACTTCTATACCATGgtaaatgcttgagcgtatctaataaactatatacctgtttggaactatgcacagtgtagcccgggtagccattcagttgtttccgtgaaagatggaggtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG