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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATATGAACTATTGCATCAAATGGAGCCATATATTAATCAGgttacttttaaacatttcctctgtattatgctgttaatgctttgctcttgtagttagatatcttaacatgtaaatattagcaccttgcatttctgctttc...

Basic information

species Zea mays
transcript GRMZM5G872204_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872204_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 10
GGATATGAACTATTGCATCAAATGGAGCCATATATTAATCAGgttacttttaaacatttcctctgtattatgctgttaatgctttgctcttgtagttagatatc-ttaacatgtaaatattagcacct--tgcatttctgctttc---------------------------------------------------------------
|| |||||| | ||||| |||||||||||||||||||| ||||||     | | | ||  ||     |||  |  | | |  || | | ||| |  |  ||  | || | |   ||   ||| ||  |  | ||||   | |                                                                  
GGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGgtttggaatcagctttgtct-----ttacacactcattttttggttgttggaagtgcatgccatttataaaaaacatttatcaagtgatacattgagggtgattaattggcgaacatttgagtcggtgaaaacaaattgattcactcaaggctagttgttttgcag

upper sequence: GRMZM5G872204_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 10
GGATATGAACTATTGCATCAAATGGAGCCATATATTAATCAGgttacttttaaacatttcctctg--tattatgctgttaatgctttgctcttgtagttagatatcttaacatgtaaatattagcaccttgcatttctgctttc----------------------------------------------------------
|| |||||| | ||||| |||||||||||||||||||| ||||||     | | | ||  || |    | |    | ||  |   | |   |    || |  |||   ||||| ||   | | | || |||    |      |                                                           
GGGTATGAATTGTTGCACCAAATGGAGCCATATATTAACCAGgtttggaatcagctttgtctttagacactcattttttggtttctagaagtacatgtcatttataaaaacatttatcaagtggtacattgagggtgattaattggcaaacatttgagtcggtgaaaataaattgattcactccaggctagttgttttgcag

upper sequence: GRMZM5G872204_T01 (Zea mays), 5'ss of exon 7
lower sequence: AT5G61980.1 (Arabidopsis thaliana), 5'ss of exon 10
GGATATGAACTATTGCATCAAATGGAGCCATATATTAATCAGgt----tacttttaaacatttcctctgtattatgctgttaatgctttgctcttgtagttagatatcttaacatgtaaatattagcaccttgcatttctgctttc-------------------
|||||||||||| | |||||||||||||| | ||||||||||||    |||| |||  |   |  | |  |||    ||   ||  ||| || | | |  |       ||   ||  ||  | ||| ||   | || || |  ||                    
GGATATGAACTACTACATCAAATGGAGCCTTTTATTAATCAGgtctgatactcttagccgcatgtttttcatt----tgcagatatttttctgtagcaaat-----ctttcttatccaaggaatagtacaaggtatatccgtgtttaattgaaattttacggcag