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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACTTTTTCTGTGCTGGGCCATAATGCAAGGATTTGTCATGATGTTGCAGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAGgtgatattctgacaagaaaggaggatctcatccttattgtcttgatagaatttactccatcgaatcacatatataaattaatctaggtttgtcggactca...

Basic information

species Zea mays
transcript GRMZM2G088648_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088648_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 5'ss of exon 6
-------------GGAACTTTTTCTGTGCTGGG-----CCATAATGCAAGGATTTGTCATGATGTTGCAGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAGgtgatattc-tgacaagaaaggaggatct-catccttattgtcttgatagaat-------ttactccatcgaatcaca-tatataaattaatctaggtttgtcggactca
                  || | |  |||||         || |  | |  ||  |  || | |   ||   |   | |   ||  ||    |||  | |    || ||||     |  |  | | | | |  |    | |  | ||  || ||||||  |      |  |       || ||     |   || | |  |    ||   |  | | |  | |     
GTGGATGTGCCATCACTATTGTGCCATGCTGATGTCTCTTATTAGTCTAACATGGGAGATAAAGGGACAACCTGATTGTTCTCGAAAACAGgtatgcaattttttttctttccactatatactgtacataatgaatgtgcataacctgtatacttattcacagagaggcgtcgagctgtttctgtgctgggccataatgcaaggtttcgccatgatgttgcag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15005287|gb|BI325354.1|BI325354
EST:     AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAG                         GCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA
genomic: AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAGgtgatattct ... tttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA
EST: gi|15005286|gb|BI325353.1|BI325353
EST:     AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAG                         GCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA
genomic: AGAATAGATATCAGCGTCAAAGATTATATACTAGGATTGCTTTGGGGAAGgtgatattct ... tttcaatcagGCTAAAAGGATGGATGTTGTATGGGGAGAGACTGCTGGTGTTGAAGGTCAA