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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGATCAGTGAGCCATGTACATGCTGCCATGGTACTGGTCGTGTGGAAGCTCTTGACACATCGTTTTCAAAGATCGAACGTGAAATATGTCGACGTCTTgtaagttctaaaggctaattacatttttacttttattttgtgttagcaaatgtatcacttacaaatttaggacctgtttgtttgtgattataatatgtcc...

Basic information

species Zea mays
transcript GRMZM2G030433_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030433_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os08g23430.1 (Oryza sativa), 5'ss of exon 12
CATGATCAGTGAGCCATGTACATGCTGCCATGGTACTGGTCGTGTGGAAGCTCTTGACACATCGTTTTCAAAGATCGAACGTGAAATATGTCGACGTCTTgtaagttctaaaggctaattacatttttactttt--attttgtgttagcaaatgtatcacttacaaatttaggacctgtttgtttgtgattataatatgtcc-
||||||||||||||| ||| | || |||||||||| ||| ||||||||||||||||| || || ||||| ||||| || |||||||| |||||||| ||||||||| ||| |  || |  || |    |  | |  ||| | | ||||   |  |    || | |   ||   |      | | || ||||  |   | |   
CATGATCAGTGAGCCGTGTCCTTGTTGCCATGGTATTGGCCGTGTGGAAGCTCTTGATACTTCTTTTTCGAAGATAGAGCGTGAAATCTGTCGACGCCTTgtaagtcctacaaacttaccacttaccaatctctcaattattttttagttgacatc---ctcaaatccttgctattgaactttctgagatttgaccgtatagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16378296|gb|BI992378.1|BI992378
EST:     GTGAAATATGTCGACGTCTT                         GCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGG
genomic: GTGAAATATGTCGACGTCTTgtaagttcta ... attcaaccagGCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGG
EST: gi|60355440|gb|DN222413.1|DN222413
EST:     TTTTCAAAGATTGAACGTGAAATAGGTCGACGTCTT                         GCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGG
genomic: TTTTCAAAGATCGAACGTGAAATATGTCGACGTCTTgtaagttcta ... attcaaccagGCTGCCTCTCGACGAAAATCAGACCCTGAGAAACCAAAATCATGGCCAAGG