ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TAAGTTTGCAGAGTACGAGAAGAAGTATGCAGATGATGCAGCAACCTTGAAAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatacatatctactcacaatactgcatttgatactgacacatggaggattaaactctaatggaagattcttgtctttttccccttctctag

Basic information

species	Zea mays
transcript	GRMZM2G033208_T01
intron #	6
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G033208_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os06g04270.1 (Oryza sativa), 5'ss of exon 6

TAAGTTTGCAGAGTACGAGAAGAAGTATGCAGATGATGCAGCAACCTTGAAAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaata----catatctactcacaatactgcatttgatactgacacatggaggattaaactctaatggaagatt-cttgtctttttccccttctctag
|||||| || ||||| |||||||||||  |||| |||||||| |||||||| || ||  || | |||||||| ||  ||||||||| ||| ||||||||||||||  |     ||| |||||||| ||     |||||||  |||  |  || | ||| | | |||||||| ||||| ||||  || | |           
TAAGTTCGCCGAGTATGAGAAGAAGTACCCAGAAGATGCAGCGACCTTGAAGAGCATTGTCTCAGGGGAGTTGCCTGCTGGCTGGGCTGACGCTCTTCCTgtaagtcttttaccatttctactcataa-----catttga-gctggtatgtgaatgatgacattctaatggtagattacttgatttgtacag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|7137734|gb|AW499243.1|AW499243

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|71311290|gb|DR791959.1|DR791959

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|74242160|gb|DT650074.1|DT650074

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|78083891|gb|DV512284.1|DV512284

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|78079232|gb|DV507644.1|DV507644

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|31360105|gb|CD444462.1|CD444462

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|29167733|gb|CB410993.1|CB410993

EST:     GGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: GGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|5566955|gb|AI881866.1|AI881866

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|67017393|gb|CO446142.1|CO446142

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|9952380|gb|BE638963.1|BE638963

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|76281987|gb|DV021555.1|DV021555

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|31353935|gb|CD438292.1|CD438292

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|67012406|gb|CO441155.1|CO441155

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|71435831|gb|DR816881.1|DR816881

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

EST: gi|76285425|gb|DV024993.1|DV024993

EST:     AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCT                         AAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG
genomic: AAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 478

TAAGTTTGCAGAGTACGAGAAGAAGTATGCAGATGATGCAGCAACCTTGAAAAGTATCATCACGGGGGAGTTACCCACTGGCTGGGTTGATGCTCTTCCTgtaagaatac ... ccttctctagAAATACACTCCAGAGAGCCCAGGAGATGCCACCAGGAACCTCTCCCAGCAGTGCCTGAACGCCCTTGCTAATGTTGTGCCTGGTCTTATCGGAGGCAGTG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1576

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 731