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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATTTGTGGGACGAAAGTGTGTAATCAAAGAGCGTTTTTCAAAAAAGTACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCTgttagtctctccaaccaacatgttattatcatttcttttcttcatgtgtctacttttgtttctatgggaaatgtcaatctcaggatgcttacctattttt...

Basic information

species Zea mays
transcript GRMZM2G313649_T06
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G313649_T05 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g28640.1 (Oryza sativa), 5'ss of exon 3
GACATTTGTGGGACGAAAGTGTGTAATCAAAGAGCGTTTTTCAAAAAAGTACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCTgttagtctctccaaccaacatg--ttattatca----tttcttttcttcatgt---gtctacttttg--tttctatgggaaatgtcaatctcaggatgcttacctattttt
 |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||| ||   ||| ||||||  ||||| | |    || || || |   |||   |  |   | ||  ||||| ||    |  | ||||  ||| |              
AACATTTGTGGGACGGAAGTGTGTAATCAAAGAGCGGTTTTCAAAGAAGTACCGACACCCATTGTTGGACTCAAAGTTGACTCTTAAACGCTTAAATGCTgtcagtttccataactaacatgctttatttttagatattcctgttttctgtgtagagcatttctctgattttctttgtattagataaatcaaaggctaaa-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71442372|gb|DR823422.1|DR823422
EST:     AAGCGCTTAAATGCT                         GAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
genomic: AAGCGCTTAAATGCTgttagtctct ... ccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
EST: gi|211475124|gb|FL216727.1|FL216727
EST:     ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCT                         GAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
genomic: ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCTgttagtctct ... ccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
EST: gi|60343573|gb|DN210546.1|DN210546
EST:     ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCT                         GAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA
genomic: ACCGACACCCATTGTTGGACTCGAAGTTGACTCTAAAGCGCTTAAATGCTgttagtctct ... ccatgtgcagGAAGCTCGGTGCATGACAAAAGCAAGAAGGCTTGGTGTTCCTACCCCAGTA