1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACGgtgagatgagatcactcagcagttcatctactgcgctgcgcatttccctttcgtctcctgatttttgatgaaaggtgaaccgtgtcgtctgtgctgccatctaattcctatttccatctctttctttttttttccttcttaaactctag
species | Zea mays |
transcript | GRMZM2G157034_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGACGAGGAGCTCTCTGTCCACCTGGGTGCTTACATGCGGCAGAAGAACG CCAATGTTGAGGTTACTCTGCGCATAGTATGCCAACCACAAGCACTTTTCCEST: gi|149042078|gb|EE047056.2|EE047056
genomic: AGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACGgtgagatgag ... taaactctagCCAATGTTGAGGTTACTCTGCGCATAGTATGCCAACCACAAGCACTTTTCC
EST: AGACGAGGAGCTCTCTGTCCACCTGGGTGCTTACATGCGGCAGAAGAACG CCAATGTTGAGGTTACTCTGCGCATAGTATGCCAACCACAAGCACTTTTCCEST: gi|148939524|gb|EC884116.2|EC884116
genomic: AGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACGgtgagatgag ... taaactctagCCAATGTTGAGGTTACTCTGCGCATAGTATGCCAACCACAAGCACTTTTCC
EST: AGACGAGGAGCTCTCTGTCCACCTGGGTGCTTACATGCGGCAGAAGAACG CCAATGTTGAGGTTACTCTGCGCATAGTATGCCAACCACAAGCACTTTTCC
genomic: AGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACGgtgagatgag ... taaactctagCCAATGTTGAGGTTACTCTGCGCATAGTATGCCAACCACAAGCACTTTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGAGAAGTTGCCCTATGCATTCTACGTTGGAGACGAGGAGCTCTCTGTCTACCTGGGTGCTTACATGCGGCAGAAGAACGgtgagatgagatcactcagcagttcatctactgcgctgcgcatttccctttcgtctcctgatttttgatgaaaggtgaaccgtgtcgtctgtgctgccatctaattcctatttccatctctttctttttttttccttcttaaactctag
- - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC