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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCATTTCTCTGAAACATTATGCGCAGGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcgacttctctgtttcaagtctaaactgcagagaccatgctgcagtgggaatctgaaaacattaccacccttttcag

Basic information

species Zea mays
transcript GRMZM2G147268_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147268_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g43650.2 (Oryza sativa), 5'ss of exon 5
ACTCATTTCTCTGAAACATTATGCGCAGGTATGCCTATCTAAAGGGTTAGGCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcgacttctctgtttcaagtctaaactgcagagaccatgctgcagtgggaatctgaaaacattaccacccttttcag
                            || ||| ||||||||||||||||||| ||  | ||||||||| ||||||||||   ||||||||| || ||||| || || | |||| | | | || |    ||   | |   || | ||   ||  |   || ||| || | ||    ||||||
----------------------------GTGTGCATATCTAAAGGGTTAGGCGCTCCTGTTGGATCAGTTATTGTTGGTTCGACGGCCTTCATAGAAAAGgtctgttcaa-ttctgtttgttaacttgttaccttaaactgca-gatgggatgtaacgatggaaatatgaacaatgctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211227174|gb|FL465036.1|FL465036
EST:     GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG                         GCTAGAATTCTTAGGAAGACCTTAGGCGGTGGGATGAGGCAGGTTGGAGTT
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
EST: gi|78111111|gb|DV529508.1|DV529508
EST:     GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAG                         GCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT
genomic: GCGCACCCATCGGATCAGTTGTTGTTGGTTCAGAGGCCTTCATCGACAAGgtttggtcga ... cccttttcagGCTAGAATTCTTAGGAAGACCCTAGGCGGTGGGATGAGGCAGGTTGGAGTT