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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAAGGAGGCGCCTTGGTAATGGCATTAGTGTACAAGGGAATGTGGATCCAGCATTTTTGTTCTCACCATTACCAGTACTGACTGATGAAATTCATAGgttagtaaaggctcaaagatttccatttaatttacgttattttgtgtttttgcttaatgctcatgtgcaattcattaatgagatcacctaaagtgttgct...

Basic information

species Zea mays
transcript GRMZM2G024738_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024738_T03 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g43390.2 (Oryza sativa), 5'ss of exon 3
ATGGAAGGAGGCGCCTTGGTAATGGCATTAGTGTACAAGGGAATGTGGATCCAGCATTTTTGTTCTCACCATTACCAGTACTGACTGATGAAATTCATAGgttagtaaaggctcaaagatttccatttaatttacgttattttgtgtttttgct--taatgctcatgtgcaattcattaatgagatcacctaaagtgttgct
|||||||||| |||||||||||    ||||||||||| |||||||| || ||||||||| | || || ||||||||||||||||| |||||||||||||||||||| ||  ||  |   |     || | |||  |||  |||  |||| |  |  | |   |   |     ||||| | |||| || || ||| |||    
ATGGAAGGAGACGCCTTGGTAACAAAATTAGTGTACAGGGGAATGTTGACCCAGCATTTCTATTTTCTCCATTACCAGTACTGACCGATGAAATTCATAGgttagttaaaacttcattgtgcattttcattttctgttcatttaagtttctaatacttacatttgagaatgcttcatcagtgaggtctcc-aaattgtcca-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32789142|gb|CD941378.1|CD941378
EST:     CCAGCATTTTTGTTCTCACCATTACCAGTACTGACTGATGAAATCCATAG                         GGTTGTGAAAGCAGCTGGTCCAAAAGGTCATATACTTA
genomic: CCAGCATTTTTGTTCTCACCATTACCAGTACTGACTGATGAAATTCATAGgttagtaaag ... tgctctgcagGGTTGTGAAAGCAGCTGGTCCAAAAGGTCATATACTTA