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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCACCAACTGACATGGAAGCACAAATTCAACAACTTGAGCAAGAAGCATATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagaccattaaactgttcactgtttatttggtgtttgatgattttgttgtcatttctcaaagttgacttaactctaaccttctcag

Basic information

species Zea mays
transcript GRMZM2G049155_T03
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os09g10710.3 (Oryza sativa), 5'ss of exon 3
AGCACCAACTGACATGGAAGCACAAATTCAACAACTTGAGCAAGAAGCATATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttga-gaccattaaactgttcactgtttattt---ggtgtttgatgattt-tgttg----tcatttctcaaagttg--acttaactctaaccttctcag
||| |  ||||| |||| | ||||||| || || ||||| |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||||||||||   ||||||||||| |    |  |||| |   ||| | || |||||  | |||    | || |||||||| ||   || |  || |          
AGCCCATACTGATATGGCAACACAAATCCATCATCTTGAACAAGAAGCATATTGCTCGGTTCTTCGTGCATTTAAAGCCCAGTCTGACGCCATTACATGGgttgttaaccattaaactatggttttattatctttgggtctgtgctgattcatcttgaacattatatctcaaagctgtttctcatttccag---------

upper sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 3
lower sequence: Vv13s0156g00360.t01 (Vitis vinifera), 5'ss of exon 2
AGCACCAACTGACATGGAAGCACAAATTCAACAACTTGAGCAAGAAGCATATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgt-tgagaccattaaactgttcactgtttatttggtgtttgatga---ttttgttgtcatttctcaaagttg---acttaactctaaccttctcag
 |    |||||| |||||  | |||||||| ||||| ||||||||||||||| |||||||  |  | || |||||||| ||  ||||||||||||| |||||      |  | |   ||||  |  |  |  |  | ||  | |    |||| ||  ||  | |   |  ||   | |  | | |    |  ||||
TGGTGAAACTGATATGGAGACCCAAATTCACCAACTAGAGCAAGAAGCATATAGTTCAGTTTTAAGAGCCTTCAAAGCTCAAGCTGATGCCATTACTTGGgtacttttctgtcattttgtttgc-atgaacctaatattctaaggaattttttttaccaggtttagtaactgctaaatgcaatgttttttcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211151500|gb|FL264768.1|FL264768
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACT
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACT
EST: gi|211378807|gb|FL247496.1|FL247496
EST:     AAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: AAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|31356368|gb|CD440725.1|CD440725
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211151493|gb|FL264761.1|FL264761
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACT
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACT
EST: gi|211150068|gb|FL264760.1|FL264760
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAA
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAA
EST: gi|211150059|gb|FL264751.1|FL264751
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTA
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTA
EST: gi|71323933|gb|DR798642.1|DR798642
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|71449494|gb|DR830544.1|DR830544
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211150061|gb|FL264753.1|FL264753
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211378814|gb|FL247503.1|FL247503
EST:     AAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: AAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211151498|gb|FL264766.1|FL264766
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATC
EST: gi|211150057|gb|FL264749.1|FL264749
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211150058|gb|FL264750.1|FL264750
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|149097227|gb|EE183045.2|EE183045
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211150056|gb|FL264748.1|FL264748
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGGAAGGAACTAAGAGTATCTGA
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGG-AAGGAACTAAGAGTATCTGA
EST: gi|211151495|gb|FL264763.1|FL264763
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGGAAGGAACTAAGAGTATCTGA
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGG-AAGGAACTAAGAGTATCTGA
EST: gi|78085509|gb|DV513902.1|DV513902
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211150067|gb|FL264759.1|FL264759
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAG
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAG
EST: gi|211150066|gb|FL264758.1|FL264758
EST:     TTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACCATGG                         GAGAAGGAAGGTCTCATGAACTGAACTTAGGAAAGGAACTAAAGAGT
genomic: TTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTAC-ATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGA-CTGAACTTAGGAA-GGAACTAA-GAGT
EST: gi|148932071|gb|EC875426.2|EC875426
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGGAACTAAGAGTATCTGAC
EST: gi|211151502|gb|FL264770.1|FL264770
EST:     ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGG                         GAGAAGGAAGGTCTCATGACTGAACTTAGGAAGG
genomic: ATTGTTCAGTCCTTCGTGCATTCAAAGCCCAGTCTGATGCCATTACATGGgttgagacca ... accttctcagGAGAAGGAAGGTCTCATGACTGAACTTAGGAAGG