1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAACATCCCCTTCCTACTGCTCCAGCTCCCGCAGATCGTCCTCAACACCCGCAACCTCCTCGCCGGCAACAAGACCGCGCTCTTCGCCGTGCCGTGGCTTgtacggcccccaattcgcgtctcagattccacctcctctgtgtgactgtgtctgctgtgacgatcgttttgacggatctcattgcacgcttcag
species | Zea mays |
transcript | GRMZM2G156356_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAACCTCCTCGCCGGCAACAAGACCGCGCTCTTTCGCCGTGCCGTGGCTT GGAATGCTCACTGGGCTGCTGGGCAACCTCTCGCTEST: gi|71313561|gb|DR793355.1|DR793355
genomic: CAACCTCCTCGCCGGCAACAAGACCGCGCTCTT-CGCCGTGCCGTGGCTTgtacggcccc ... cacgcttcagGGAATGCTCACTGGGCTGCTGGGCAACCTCTCGCT
EST: GCAACCTCCTCGCCGGCAACAAGACCGCGCTCTTCGCCGTGCCGTGGCTT GGAATGCTCACTGGGCTGCTGGGCAACCTCTCGCTCCTCTCCTATTTCGCCEST: gi|31351097|gb|CD435454.1|CD435454
genomic: GCAACCTCCTCGCCGGCAACAAGACCGCGCTCTTCGCCGTGCCGTGGCTTgtacggcccc ... cacgcttcagGGAATGCTCACTGGGCTGCTGGGCAACCTCTCGCTCCTCTCCTATTTCGCC
EST: GCAACCTCCTCGCCGGCAACAAGACCGCGCTCTTCGCCGTGCCGTGGCTT GGAATGCTCACTGGGCTGCTGGGCAACCTCTCGCTCCTCTCCTATTTCGCC
genomic: GCAACCTCCTCGCCGGCAACAAGACCGCGCTCTTCGCCGTGCCGTGGCTTgtacggcccc ... cacgcttcagGGAATGCTCACTGGGCTGCTGGGCAACCTCTCGCTCCTCTCCTATTTCGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACATCCCCTTCCTACTGCTCCAGCTCCCGCAGATCGTCCTCAACACCCGCAACCTCCTCGCCGGCAACAAGACCGCGCTCTTCGCCGTGCCGTGGCTTgtacggcccccaattcgcgtctcagattccacctcctctgtgtgactgtgtctgctgtgacgatcgttttgacggatctcattgcacgcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC