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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTCCATCAAGTGATCAGGGCGAATGATGACCTCACCCCTGAACATCACCAGTTTTTCCTGTACCAACTTCTTCGAGCTCTCAAGTACATACATGCCGgtaagtatattagctagtaccaaccacatggtacctatcccatgtaccaaggcagtttatatatttgtcagactgttgtggttcatctgctcatggttatctagtttgttgttatgatatattatgataatgtgctccttgcggtctatattggtgcag

Basic information

species Zea mays
transcript GRMZM2G135904_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135904_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os06g49430.1 (Oryza sativa), 5'ss of exon 2
GATCTCCATCAAGTGATCAGGGCGAATGATGACCTCACCCCTGAACATCACCAGTTTTTCCTGTACCAACTTCTTCGAGCTCTCAAGTACATACATGCCGgtaagtatattagctagtaccaaccacatggtacctatcccatgtaccaaggcagtttatatatttgtcagactgttgtggttcatctgct--catggttatctagtttgttgttatgatatattatgataatgtgctccttgcggtctatattggtgcag
|||||||||||||| ||||| ||||| |||||||||||||| || ||  ||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||    ||| ||| |   || | |    | || |    |  |||     ||   | || |    |    ||||||   || |||   |  |||||   ||||| || || |  ||||| || ||    ||  || |                      
GATCTCCATCAAGTCATCAGAGCGAACGATGACCTCACCCCGGAGCACTACCAGTTTTTCCTGTACCAACTTCTCCGTGCTCTCAAGTACATCCATGCAGgtaagc---ttaactactgataatccccaattccccaaga-acctacttgaccaccat-taaacacatagttctgttg--atttatcaattaacatggaattctagcttattctc-tgataaatcatctatattggcacag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67016391|gb|CO445140.1|CO445140
EST:     CCAGTTTTTCCTGTACCAACTTCTTCGAGCTCTCAAGTACATACATGCCG                         CTAATGTATTCCATCGCGATCTAAAGCCCAAGAATATACTGGCTAACTCGG
genomic: CCAGTTTTTCCTGTACCAACTTCTTCGAGCTCTCAAGTACATACATGCCGgtaagtatat ... attggtgcagCTAATGTATTCCATCGTGATCTAAAGCCCAAGAATATACTGGCTAACTCGG
EST: gi|22545672|gb|BU098031.1|BU098031
EST:     CCAGTTTTTCCTGTACCAACTTCTTCGAGCTCTCAAGTACATACATGCCG                         CTAATGTATTCCATCGTGATCTAAAGCCCAAGAATATACTGGCTAACTCGG
genomic: CCAGTTTTTCCTGTACCAACTTCTTCGAGCTCTCAAGTACATACATGCCGgtaagtatat ... attggtgcagCTAATGTATTCCATCGTGATCTAAAGCCCAAGAATATACTGGCTAACTCGG