1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GACTACCAAGGGGCAGTCAACGCGTTCACGGAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctcttgtttctggccactgcttattttcaaccatttccataactgggcctctatattggacaccaccatgctatttttcagttatttcaatgttccagttattggccacagcgaagtatgaccatccaaattcccaactattctcatataacttgtag
species | Zea mays |
transcript | GRMZM2G155314_T02 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|78118020|gb|DV536407.1|DV536407
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|5456056|gb|AI833746.1|AI833746
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCTCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|166530381|gb|EG288599.1|EG288599
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|88754633|gb|DY538774.1|DY538774
genomic: GAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|5058919|gb|AI737395.1|AI737395
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: CAAGAAAGCCTTAAG GGAGGCCACCGATTCTCTGGCGATTCCGTTGGCCGCTCCGGAGAACAGAACEST: gi|211505139|gb|FL433740.1|FL433740
genomic: CAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGA--ACGTTGGCCGCTCCGGAGAACAGAAC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|78027423|gb|DV495810.1|DV495810
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCTCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|211080599|gb|FL433920.1|FL433920
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|33467531|gb|CF244580.1|CF244580
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|113562532|gb|DW736945.1|DW736945
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: TGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|78083173|gb|DV511566.1|DV511566
genomic: TGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|78107759|gb|DV526177.1|DV526177
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|91873914|gb|EB403871.1|EB403871
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCCEST: gi|74242115|gb|DT650029.1|DT650029
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
EST: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAG GGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAAAACCC
genomic: GAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctct ... taacttgtagGGAGGCCACCGATTCCCTGGCGAACGTTGGCCGCTCCGGAGAACAGAACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTACCAAGGGGCAGTCAACGCGTTCACGGAAGCATTGAAACTGGATCCTGCAAGTTTAGAGATCAAGAAAGCCTTAAGgtaatgctcttgtttctggccactgcttattttcaaccatttccataactgggcctctatattggacaccaccatgctatttttcagttatttcaatgttccagttattggccacagcgaagtatgaccatccaaattcccaactattctcatataacttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA