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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCGCGGCGTACCACCAGCCTGCGCTCCTCCTCCACCAGCGACGCCGGCATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctccttcgtctctcttctcttccggcatcggcggcggatgtcgcgtcattgtttgatcggttgcctggcttgggttgggttgccgcgcag

Basic information

species Zea mays
transcript GRMZM2G156356_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211230965|gb|FL341125.1|FL341125
EST:     ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG                         GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: gi|211213516|gb|FL341943.1|FL341943
EST:     ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG                         GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: gi|71313561|gb|DR793355.1|DR793355
EST:     ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG                         GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: gi|31351097|gb|CD435454.1|CD435454
EST:     GTCACTGCCTCCAAGCCGGTTCTCAAG                         GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCCGGC
genomic: GTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
EST: gi|211482771|gb|FL310042.1|FL310042
EST:     ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAG                         GACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC
genomic: ATGGACCGCCCCCCGTCGCCGCTGTCACTGCCTCCAAGCCGGTTCTCAAGgtaccctcct ... tgccgcgcagGACCCGAAGAAGTACCAGGAGTGGGACTCCATGACGGCCAAGTTCGCTGGC