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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGGCGGAGGAGGAGGCGCTGCGCCGGCGCGCCGCCGCGCTGCAGGGGGAGCTAAGGCGGCTACGCGAGGCCGCCGCGGCGCACGCGGACAGCGAAAAGgtgcgctgctcgcagctcatccttccgacgctacgcgctcgcgctctttgtgtgtgtccgctcgcgcgtgcgtgcctcccgaacccccgtgtcactgcgc...

Basic information

species Zea mays
transcript GRMZM2G088648_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088648_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g05660.1 (Oryza sativa), 5'ss of exon 1
---GCGGGCGGAGGAGGAGGCGCTGCGCCGGCGCGCCGCCGCGCTGCAGGGGGAGCTAAGGCGGCTACGCGAGGCCGCCGCGGCGCACGCGGACAGCGAAAAGgtgcgctgc-tcgcagctcatccttc----cgacgctacgcgctcgcgctctttgtgtgtgtccgctcgcgcgtgcgtgcctcccgaacccccgtgtcactgcgc
   |  |||||||||||||||||| ||||| ||||||||||||||    |  |||||     |||| ||| ||||||||||    ||||| |||||||| ||||| | ||    ||| |||  | ||||    ||  | | ||||| |||||||   | | | |   ||  | | ||||||   |  || |       | |   | | 
GTCGTCGGCGGAGGAGGAGGCGCTCCGCCGCCGCGCCGCCGCGCTCGGCGCCGAGCTCGCCAGGCTCCGCAAGGCCGCCGCC---CACGCCGACAGCGACAAGgtactctctaccgctgctgctgcttcgcctcgttggtgcgcgcgcgcgctc---gcgcgcgggtgcgtggg-gtgcgtcggtggcggagtggatcgccggggtg-