1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGCTCCCCGCCGATGAGCTGCCGCGCGGCGCCGTGGAGTCGCCCGTCGCACATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtccacgagctccctctcgcctccagatttcgtggttatctgacttagctgttcgcttactgcctaccttgtgggttgtttccccgatgttgggc...
species | Zea mays |
transcript | GRMZM2G080044_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTG GAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAAEST: gi|29543792|gb|CB604172.1|CB604172
genomic: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtcca ... ttcctgacagGAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAA
EST: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTG GAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAAEST: gi|211318167|gb|FL216125.1|FL216125
genomic: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtcca ... ttcctgacagGAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAA
EST: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTG GAAGTAGGAATCTGTGGAAGAACTCATGGAAAATTGGTGCTGGTGTTTCAAEST: gi|31998276|gb|CD662009.1|CD662009
genomic: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtcca ... ttcctgacagGAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAA
EST: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTG GAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAAEST: gi|211318171|gb|FL216129.1|FL216129
genomic: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtcca ... ttcctgacagGAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAA
EST: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTG GAAGTAGGAATCTGTGGAAGAACTCATGGAAAATTGGTGCTGGTGTTTCAAEST: gi|211318168|gb|FL216126.1|FL216126
genomic: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtcca ... ttcctgacagGAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAA
EST: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTG GAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAA
genomic: CATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtcca ... ttcctgacagGAAGTAGGAATCTGTGGAAGAACTCATGGACAATTGGTGCTGGTGTTTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTCCCCGCCGATGAGCTGCCGCGCGGCGCCGTGGAGTCGCCCGTCGCACATTGCTGGTCCGCGTGTGCCCACCCCGGCGCGGCCGCGCTTCGCACTTGgtgaggtccacgagctccctctcgcctccagatttcgtggttatctgacttagctgttcgcttactgcctaccttgtgggttgtttccccgatgttgggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcctcc