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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATCAAGAAAACTTATACATGAGGCTTATGCACGAGGGAGCTCTGACAACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatgagtctgtcatggtcatgcttctaccaagttgaagattgaatagtgttgtaattggtgttggccttttgattttggcag

Basic information

species Vitis vinifera
transcript Vv18s0001g15050.t01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030454|gb|FQ432392.1|FQ432392
EST:     ACATTACTTGCCTTGTAGTCCGATTCAAGAACTCATGAGAACTTGTCGAG                         GTAAAGGGGCTGGA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAA-GGGGCTGGA
EST: gi|45368324|gb|CK906683.1|CK906683
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
EST: gi|349815543|gb|FQ400699.1|FQ400699
EST:     -CATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGT
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGT
EST: gi|83274595|gb|DV938692.1|DV938692
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGTTCTCGTTTCTGCAATATTTGCTTGA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
EST: gi|351023467|gb|FQ432850.1|FQ432850
EST:     CATTACTTGCGTTGTAGTCCGATTTCA-GAACTCATGAGAACATGTCGAG                         GTAAGGGGCTG
genomic: CATTACTTGCGTTGTAGTCCGATT-CAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTG
EST: gi|110371845|gb|EC935970.1|EC935970
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
EST: gi|349832452|gb|FQ421013.1|FQ421013
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTG
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTG
EST: gi|32245467|gb|CD711286.1|CD711286
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
EST: gi|351012826|gb|FQ430389.1|FQ430389
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAA
EST: gi|351030991|gb|FQ439027.1|FQ439027
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGATTGGGGAAAGT
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGT
EST: gi|349830246|gb|FQ420506.1|FQ420506
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGGCA-TATTTGCTT
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTG-CAATATTTGCTT
EST: gi|110396288|gb|EC961969.1|EC961969
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
EST: gi|110377520|gb|EC942589.1|EC942589
EST:     ACATTACTTGTGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAATGGGGAAAGTTCTCATTTCTGCAATATTTGCTTGA
EST: gi|351046056|gb|FQ441439.1|FQ441439
EST:     ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAG                         GTAAGGGGCTGG-GAAATGGGGAAAAGT-CTCATTTCTGCAATATTTGCTT
genomic: ACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatga ... attttggcagGTAAGGGGCTGGAGAA-TGGGGAAA-GTTCTCATTTCTGCAATATTTGCTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCATCAAGAAAACTTATACATGAGGCTTATGCACGAGGGAGCTCTGACAACATTACTTGCGTTGTAGTCCGATTCAAGAACTCATGAGAACATGTCGAGgtttggatgagtctgtcatggtcatgcttctaccaagttgaagattgaatagtgttgtaattggtgttggccttttgattttggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC