Sequence
atgc intronic sequence ATGC exonic sequenceCAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctatatgtatatctaacaaagttgatttcatacttttataggtgctt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os12g30540.1 (Oryza sativa), 5'ss of exon 8
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctatatgtatatctaacaaagttgatttcatacttttataggtgctt----
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CAAAGGTTGTAGTGATGTTTATGCATCATTTGATAAATATGTCGAAGTGGAGCGTCTAGAGGGTGATAACAAATATCATGCAGAGCAGTATGGCTTACAGgt-actgacaaatcctgcactccgaagttgaatattttgatgtag-tgaacttcttagcaggtttttttgggagt--acatgatacatgtggagtaaatttagg
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: LOC_Os11g36470.1 (Oryza sativa), 5'ss of exon 4
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgt-----tagttgctacatgtatttaac---aaagcctaatttttaggtgcaggttagttgctatatgtatatctaacaaagttgatttcatacttttataggtgctt
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TAAAGGTTGTCGTGATGTGTATGCATCGTTTGATAAATATGTTGAAGTTGAGCGCCTCGAAGGTGATAATAAGTATCATGCAGAGAATCATGGTTTACAGgtacccacatgttcttctcagttctcactttaagctttgaaactgaagctagagttggttgtttcataaaggtttgatataacttgt---ggacttttatgta-----
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GRMZM2G014805_T01 (Zea mays), 5'ss of exon 8
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctatatgtatat-ctaacaaagttgatttcatacttttataggtgctt--------
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GAAAGGTTGTCGTGATGTTTATGCATCATTTGATAAGTATGTGGAAGTGGAGAGTCTAGAGGGTGATAACAAGTACCATGCGGAGCGTTATGGCTTACAGgttc----ccacaagttttgctctatgcgtgacttt-----gtagctggatatttaggtgtagatgctgattacctgattttcagagttttaggaatgtttcatggtat
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA13G16170.1 (Glycine max), 5'ss of exon 8
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagc--ctaat--ttttaggtgcaggttagttgctatatgtatatctaacaaagttgattt-catacttttataggtgctt
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TAAAGGTTGTCGTGATGTTTATGCTTCCTTTGATAAGTATGTCGAAGTTGAAAGTCTTGAGGGGGATAACAAATATCATGCTGAACAGTATGGTTTGCAGgttagttgctattcttaaatgctgaagcagcttataatattatttgtaga--agttaaccttagtgtttttcaaagaatttttctgtaaacttattttgata---
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA02G43930.1 (Glycine max), 5'ss of exon 8
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctatatgtatatctaacaaagttgatttcatacttttataggtgctt---
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GAAAGGCTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAAGGGGATAACAAATATCATGCGGAACAATATGGTTTGCAGgttggttgcaat-tgtttattttggaatctacttgtaataagtaatttg--taaaagttctgaatcttttagttcttatattgggtgtacaaaaatcattttg
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: GLYMA14G04890.1 (Glycine max), 5'ss of exon 8
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctata--tgtatatctaacaaagttgatttcatacttttataggtgctt---
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GAAGGGCTGTCCTGATGTTTATGCTTCCTTTGACAAGTATGTTGAAGTTGAACGTCTTGAAGGGGATAACAAATATCATGCGGAACAATATGGTTTGCAGgtttgctgcaat-tgtttattttggaatctacttgtaa----taagtcatttgtagaagttctgaatcttttagttcttatgttgggtgtacaaaaattgttttg
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ18164 (Selaginella moellendorffii), 5'ss of exon 6
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctatatgtatatctaacaaagttgatttcatacttttataggtgctt
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AAAAGGCTGCAAGGATGTTTATGCGTCGTTTGATAAGTACGTCGAGGTAGAGAAGCTCGAAGGGGATAACAAGTATCACGCTGAACAGCATGGCCTTCAGgtttgtt-tttcgtgttccatgtcaag---aaggtttaa----tggttgtttcttttag-----------------------------------------
upper sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 8
lower sequence: EFJ14291 (Selaginella moellendorffii), 5'ss of exon 6
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctatatgtatatctaacaaagttgatttcatacttttataggtgctt
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AAAAGGCTGCAAGGATGTTTATGCGTCGTTTGATAAATACGTCGAGGTAGAGAAGCTCGAAGGGGATAACAAGTATCATGCTGAACAGCATGGCCTTCAGgtttgtt-tttcgtgttccatgtcaag---aaggttta-----atggttgttgcttttag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110388155|gb|EC952874.1|EC952874EST: AGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAG GATGCTAGGAAGGGTGTCTTATTCATTGACTTCCCTCCTGTCCTTCAACTT
genomic: AGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgct ... cttgtctcagGATGCTAGGAAGGGTGTCTTATTCATTGACTTCCCTCCTGTCCTTCAACTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAAGGTTGTCATGATGTTTATGCTTCTTTTGATAAGTACGTAGAAGTTGAGCGCCTAGAAGGGGATAACAAATATCATGCTGAGCACCATGGATTGCAGgttagttgctacatgtatttaacaaagcctaatttttaggtgcaggttagttgctatatgtatatctaacaaagttgatttcatacttttataggtgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaag