Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAGAAATTGATGGTGTAGATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattttcttacgtataaatcattctgcaggggaataatggaatcatgtagaagtctttatgtttttttgccttttggtgagattttagatagatg...

Basic information

species Vitis vinifera
transcript Vv18s0001g15050.t01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g15050.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA20G38500.1 (Glycine max), 5'ss of exon 8
GAAGAAGAAATTGATGGTGTAGATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattttcttacgtataaatcattctgcaggggaataatggaa---tcatgtagaagtctttatgtttttttgccttttggtgagattttagatagatg
|| ||||||||||| || || |||||||| || ||||| |||| ||| |||||||||||| ||| ||| ||||| || | | ||||  ||| |  |    ||  |    |   ||  |    || | |   ||  |||  ||          | | ||||  |||||  ||  | 
GAGGAAGAAATTGACGGAGTCGATTTTATTATAATTGCTAGTGGTGGCCTTTGGAATGTCATATTAAACAAGgtgag-actatcttg-gtaaagttggccctaaacaacatagatttatctttctttttctagatttttagtagaaacatgatcttgtgaacttttatttattt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030454|gb|FQ432392.1|FQ432392
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|45368324|gb|CK906683.1|CK906683
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|349815543|gb|FQ400699.1|FQ400699
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|32245933|gb|CD711752.1|CD711752
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|83274595|gb|DV938692.1|DV938692
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|351023467|gb|FQ432850.1|FQ432850
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|351029448|gb|FQ436842.1|FQ436842
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|349817905|gb|FQ407894.1|FQ407894
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGGCAA-AGTGGAGGACATTATGGATG
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGG-CTATAGTGCAGGACATTATGGATG
EST: gi|351044250|gb|FQ447604.1|FQ447604
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|110371845|gb|EC935970.1|EC935970
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|349832452|gb|FQ421013.1|FQ421013
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|349815027|gb|FQ410250.1|FQ410250
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCCAATAAG                         GAGGCCGTGGCTATGGTGCCAGGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGC-AGGA
EST: gi|351025872|gb|FQ427884.1|FQ427884
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|351025088|gb|FQ433505.1|FQ433505
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|32245467|gb|CD711286.1|CD711286
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|351012826|gb|FQ430389.1|FQ430389
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|351030991|gb|FQ439027.1|FQ439027
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|349830246|gb|FQ420506.1|FQ420506
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|110377520|gb|EC942589.1|EC942589
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
EST: gi|351046056|gb|FQ441439.1|FQ441439
EST:     ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAG                         GAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA
genomic: ATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattt ... ctgcaatcagGAGGCCGTGGCTATAGTGCAGGACATTATGGATGCAGAAGCAGCATCAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAAGAAATTGATGGTGTAGATTTTATAATTATTGCAAGTGATGGACTTTGGAATGTCTTATCAAATAAGgtaagtattttcttacgtataaatcattctgcaggggaataatggaatcatgtagaagtctttatgtttttttgccttttggtgagattttagatagatg

- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaataa