Sequence
atgc intronic sequence ATGC exonic sequenceCTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os10g35450.1 (Oryza sativa), 5'ss of exon 6
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggta-aatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag
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TCTGTTAAACGAGAAGAGTGATGTCTACAGTTTTGGTGTGCTATTACTGGAAGCAGTGACTGGTAGAGATCCAGTTGATTATGGCCGGCCTGCTAATGAGgtgagcatatatcctaca-atctcatgcgtattatgtatgttacaaaagtccgtactattggaaattattttacggcaa----aataa--cgtctatact-aggagag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: LOC_Os01g41730.1 (Oryza sativa), 5'ss of exon 5
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgta---tttctctgtccaatgcattggggacttctttctcctttcgtcgaaagg---taaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag
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GCAGCTAAACGAGAAGAGTGACGTCTACAGTTTTGGAGTGCTACTCTTGGAAGCAGTGACCGGAAGGGATCCAGTTAACTATGGTCGACCTACCGATGAGgtggacatgcacaatctcatat-ctgtcacccttgctgcccggtcgccattattttcttaatatggagttctcacatttaaaagcagtaa--aacagtttatt----------
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G010953_T01 (Zea mays), 5'ss of exon 4
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggtaaatatacaggct-tgttcaagaagagctatgataagctgttcatgctcatggcag
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TCTGTTAAATGAGAAGAGCGATGTCTACAGTTTTGGGGTGCTACTACTGGAAGCAGTGACTGGGAGGGATCCAGTTGACTATGGTCGGCCTGCTAATGAGgtgagcatctg-ctattgtagt----attgcctcgtgcatatgctgaagcaagaa-gtccatactatttacaatacgtttcacaacaaaacag-catctgcttggtt-
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 6
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggtaaatatacaggcttgttca-agaagagctatgataagctgttcatgctcatggcag--
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TCTGTTAAATGAGAGGAGTGATGTCTACAGTTTTGGAGTGCTACTACTGGAATCAGTTACTGGGAGGGACCCAGTTGACTATGGTCGGCCAGCTAATGAGgtgagcgtctg-ctgtcatatcatg--cttgcagaacagcccatacgagag-------accatctgtttcacagaaaagcagcatctaactactatcggagacgatgcat
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA14G03290.1 (Glycine max), 5'ss of exon 5
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgt-----atttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag---
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TTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTGCTGGAAGCAGTTACTGGAAGGGACCCTGTAGACTATGCGCGTCCTGCTAATGAGgtggctaatttttatgaactctacctgcttgccagttctaaccatgctttccaccagaagtgatcactgcctttcaaatagc-tgatgagatattgtttatcttcattatgacag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA02G45540.1 (Glycine max), 5'ss of exon 7
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggactt-----ctttctcctttcgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag
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TTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTCCTCTTACTGGAAGCAGTTACTGGAAGGGATCCTGTAGACTATGCGCGCCCTGCTAATGAGgtgcctaattcttatgaactctgccagcttgccagttctaaccatactttccactggaagtcatcactgtgtttcaaatagc----tgatgagataatcttcattatgacag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA08G42170.1 (Glycine max), 5'ss of exon 5
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgt---atttctctgtccaatgcattggg--gacttctttctccttt--cgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag
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TTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTTGAAGCAGTTACTGGAAGGGATCCTGTGGACTACTCACGTCCTTCTAACGAGgtttgaaatacttaatcagtgcttccagtttactgattctaactttgttttcgatgagaagtgatcacagctttttctatagcgggtgagatt--ttgattatcctcatgacag
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: GLYMA18G12830.1 (Glycine max), 5'ss of exon 5
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatt---tctctgtccaatgcattgggg-----acttctttctccttt-cgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag-
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-TTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGtatgaaatacttaatcagtgctttcagctttctgcttctaacttctttgttttccatgaaaagtgatcaccactgtttgtatggtga-atgggattttgattatcctcatggcagg
upper sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 7
lower sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag
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TCTATTGAATGAGAAGAGTGACATCTATAGCTTTGGTGTCCTGCTGCTAGAGACTATAACTGGAAGAGATCCAGTTGACTATGAACGTCCAGCTAATGAGgta-------gcctaaaatat----gtctgctttgtcaatgtatccaggagt-----tatgaaaatgttaacttggtgttaaaacatg-tgttcttgttggcag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110384820|gb|EC949285.1|EC949285EST: AAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAG GTTAATCTTGTCGAGTGGCTTAAAGTGATGGTAGGGACAAGAAGAGCTGAA
genomic: AAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctct ... ctcatggcagGTTAATCTTGTCGAGTGGCTTAAAGTGATGGTAGGGACAAGAAGAGCTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTGTTAAATGAGAAGAGTGATATCTACAGCTTTGGTGTTCTCCTGCTGGAAGCAGTTACTGGAAGGGATCCAGTTGACTATGGCCGGCCTGCTAATGAGgtatttctctgtccaatgcattggggacttctttctcctttcgtcgaaaggtaaatatacaggcttgttcaagaagagctatgataagctgttcatgctcatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG