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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCGAAGGATCAACTGTAGTCATTTTTGGACTTGGAACTGTTGGCCTTTCTgtaagtacagagtcttattaacatcattttctgcctgtaacttatgatgataattggcagttggctaccttatcataattttgatcaatcataagttgttatatgattag

Basic information

species Vitis vinifera
transcript Vv16s0039g00320.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G23820.1 (Glycine max), 5'ss of exon 7
GTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCGAAGGATCAACTGTAGTCATTTTTGGACTTGGAACTGTTGGCCTTTCTgtaagtacagagtcttattaacatcatt-ttctgcctgtaacttatgatgataattggcagttggctaccttatcataattttgatcaatcataagttgttatatgattag
|||| || ||||| ||||| |||||  |  |  |  ||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||     ||  |||    ||| |   |    |||||| |      ||  |  |     | |  || ||  |||| | || |||  |   ||| |     |||||
GTCTGGGCGCAGCATGGAATGTTGCTGACGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCTgtaagtaca-----ttgataattcaattgtatcgatcttaacttct-----caacagataagcaacaatattttccaaattgtaattaattttcctttgat---caattag

upper sequence: Vv16s0039g00320.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G29070.1 (Glycine max), 5'ss of exon 5
GTCTAGGAGCAGCTTGGAAGGTTGCCAATATAACCGAAGGATCAACTGTAGTCATTTTTGGACTTGGAACTGTTGGCCTTTCTgtaagtacagagtcttattaacatcattttctgcctgtaacttatgatgataattggcagttggctaccttatcataattttgatcaatcataagttgttatatgattag
|||| || ||||| ||||| |||||  || |  |  ||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||  | || |  ||    ||   ||  || |  ||| |      ||  |     ||   |  || ||  |||| | || ||       ||  | ||  |||||
GTCTTGGTGCAGCATGGAATGTTGCTGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCTgtaagtacaaggactaagcaattgtat---ctatct-tggcttct-----caacagatgagtgataatattttccaaattgtaattaact-----ttccttta-aattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110363936|gb|EC927570.1|EC927570
EST:     CCGAAGGATCAACTGTAGTCATTTTTGGACTTGGAACTGTTGGCCTTTCT                         GTCGCACAAGGTGCAAAACAAAGGGGGGCATCTAGAATAATTGGTGTTGAC
genomic: CCGAAGGATCAACTGTAGTCATTTTTGGACTTGGAACTGTTGGCCTTTCTgtaagtacag ... atatgattagGTCGCACAAGGTGCAAAACAAAGGGGGGCATCTAGAATAATTGGTGTTGAC